UFO12566.5prime Sequence
1052 bp (934 high quality bases) assembled on 2012-11-02
> UFO12566.5prime
AGTCGACATGTCGGATTCGTATTATCAGGGCGAATACATCAAGCATCCCG
TTCTGTACGAGCTCAGTCACAAATATGGTTTCACAGAGAATCTGCCGGAG
AGCTGTATGTCCATACGGCTGGAGGAGATCAAGGAGGCCATTCGGCGAGA
GATCCGCAAGGAGCTGAAGATCAAAGAGGGCGCCGAGAAGCTCCGCGAGG
TGGCTAAAGATCGACGATCCCTCAGCGATGTGGCCGTTCTTGTCAAGAAG
AGCAAAAGTAAACTTGCCGAGCTGAAGTCCGAGTTGCAGGAGCTCGAGAG
TCAAATCCTCCTGACATCGGCCAACACCGCCGTCAATAGTAATGGACAAG
AATCGATCACTGCCTGCATTGATCCCAATGGCGGCTTCTTGGTCAGCGGT
GCAGTTGGTGGCTTGGGCGGCGGAAACACGGCTCTGGAGGGCGGCGCACC
GGCCACTGCCAATGACAAAGTGCTCGCCTCGCTGGAGAAGCAGCTGCAGA
TCGAGATGAAGGTGAAGACCGGGGCGGAAAACATGATCCAGTCGCTGGGC
ATCGGATGCGACAAGAAGCTGCTGGCGGAAGCCCACCAGATGCTGGCCGA
CTCGAAGGCCAAGATTGAGTTGTTGCGCCTGCGCATCATCAAGGTGAAAC
AGAACCGCGAGCAGGCCGATCGCCTCAAGGCCTCGCGCCAGATGATCGAC
GAGCATGGCCAGACGATCGGCGGGAACAACAGCAGCCAGCCGCAGAGCCT
GCAGACGACGCTGGAGGAGCGAATCGAGGAGCTCCGCCATCGACTGCGAA
TCGAGGCAGCCGTCGTCGATGGAGCCAAGAATGTTATACGCACGCTGCAG
ACGGCGAATAGGCACCGGACAGATGCTTTGCAGAGCCCATGGACGTTTGT
CGGATCGTCGCGAAACTAGATTTTCTTGCGCTACTTCTTGATTTACGACG
CAGAGCTGCCCGCCGATTCGCCTGCCGCCTAGCATTAAACGGAGCTGCAG
ATCGTCAGCTATCGATGCCCAGCTCGTTTCCTACCGTCATGCAGTCCGAA
GC
UFO12566.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkn-RQ | 4485 | CG2049-RQ | 420..1480 | 7..1048 | 4665 | 97.1 | Plus |
| Pkn-RP | 4491 | CG2049-RP | 420..1480 | 7..1048 | 4665 | 97.1 | Plus |
| Pkn-RO | 4152 | CG2049-RO | 420..1480 | 7..1048 | 4665 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9265517..9266030 | 862..349 | 2540 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9267655..9267979 | 350..26 | 1625 | 100 | Minus |
| 2R | 25286936 | 2R | 9260016..9260144 | 1006..885 | 220 | 85.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:59 has no hits.
UFO12566.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:34 Download gff for
UFO12566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RI | 413..1453 | 1..1025 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:58 Download gff for
UFO12566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RO | 413..1453 | 1..1025 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:01 Download gff for
UFO12566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RO | 413..1453 | 1..1025 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:01 Download gff for
UFO12566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9265490..9266028 | 351..884 | 98 | <- | Minus |
| 2R | 9267655..9267976 | 29..350 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:58 Download gff for
UFO12566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5152995..5153533 | 351..884 | 98 | <- | Minus |
| arm_2R | 5155160..5155481 | 29..350 | 100 | <- | Minus |
