UFO12568.5prime Sequence
844 bp (720 high quality bases) assembled on 2012-11-02
> UFO12568.5prime
AGTCGACATGGGACACCTGACGCGACGCAGCAGCCTAATGGCCATAGTCC
TGTGCCTGGTACTCAACACACAGCACCTGTCGGTGCATGGCGATGCCTCG
CACATTGAGTCCGCCGCCCTGCCACTCGAACACAGGGCCGGCTACGGTCC
ACCGGCGCCCATTTACGGTGCGCCCCAGGGACCACTGAGCACCGGAGCCA
CCAACGATGTGTCCGAGGAGGCATGGCCCCTCGCCAGCACCAACGACAGT
CCGCAGATCAAGCACCTGCAGGTGCAGTGCGAGAAGACCCACATGCGGGT
GAACATCGAGTTCGACCGACCTTTCTACGGCATGATCTTCTCCAAGGGAT
TCTACAGTGATCCACACTGCGTGCACCTGAAGCCCGGCACCGGCCACCTG
AGCGCCACCTTTGAGATCTTCCTGAATAGCTGCGGCATGACCAGCTCGGC
CAACCACAATGCCGCCGGCTATGGAGCGCCCACGCCATCGGGCAGCTATG
TGGAGAACACGATCATCATCCAGTACGATCCCTATGTGCAGGAGGTGTGG
GATCAGGCCAGGAAGCTGCGCTGCACCTGGTACGATTTCTACGAGAAAGG
CCGTCACCTTCAGCCCTTCCAGGTGGACATGCTGCATGCGGTGACCGCTA
ACTTCCTGGGCGACAACCTGCAGTGCTGGATGCAAATCCAGGTGCAGATG
CCAGCGTGAACGAAAACTGCGAAAAAAAACTGAGATGGCAGAGCCTGAAG
CTACTGTCACATCCTGTCTCCTCTAGCGCTGCTCCTGCTGGAGCAGCTCA
TCAAGTCGGTCCTACCAGAATGCAGCATCCCAGCAAAAGTCGGG
UFO12568.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dyl-RC | 2778 | CG15013-RC | 425..1111 | 8..694 | 3390 | 99.7 | Plus |
| dyl-RA | 2690 | CG15013-RA | 337..1023 | 8..694 | 3390 | 99.7 | Plus |
| dyl-RB | 2890 | CG15013-RB | 537..1223 | 8..694 | 3390 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4295671..4296296 | 694..69 | 3035 | 99.7 | Minus |
| 3L | 28110227 | 3L | 4298530..4298595 | 73..8 | 330 | 100 | Minus |
| X | 23542271 | X | 11771857..11772048 | 694..503 | 280 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:05 has no hits.
UFO12568.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:34 Download gff for
UFO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dyl-RC | 416..1113 | 1..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:03 Download gff for
UFO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dyl-RB | 529..1226 | 1..701 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:05 Download gff for
UFO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dyl-RB | 529..1226 | 1..701 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:05 Download gff for
UFO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4295671..4296291 | 74..694 | 99 | <- | Minus |
| 3L | 4298530..4298601 | 1..73 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:03 Download gff for
UFO12568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4295671..4296291 | 74..694 | 99 | <- | Minus |
| arm_3L | 4298530..4298601 | 1..73 | 95 | | Minus |
