UFO12569.5prime Sequence
1127 bp (947 high quality bases) assembled on 2012-11-02
> UFO12569.5prime
AGTCGACATGAGCGAGCAGAAAACGAGTGGGAGTGGGTCGGCGGCCGCTG
CCCGTCTGCAAATCGAGGCGGAGTACAAGGACAAGGGGCCGCAATGGCAT
CGCTTCTACAAGGAAATTTGTGAGACCTGCGACCGGGAGGCGAAGGAGAA
GCAGTTCAGCACCTCGGAATCGGAACGCCACACGAACCGCGGCCTGAATC
GCTATCGGGATGTGAATCCGTACGATCATTCCCGCATTGTTTTGAAGCGC
GGCAGCGTAGACTACATCAATGCGAACCTGGTTCAGCTGGAGCGCGCCGA
GCGCCAGTACATCCTGACCCAAGGACCGCTGGTGGACACAGTGGGCCACT
TCTGGCTGATGGTATGGGAGCAGAAGTCCAGAGCAGTTCTCATGCTCAAC
AAGCTGATGGAGAAGAAACAGATCAAGTGCCACCTCTACTGGCCCAACGA
GATGGGAGCCGACAAGGCCCTGAAACTGCCCCACGTCAAACTCACCGTGG
AGCTCGTCCGTCTCGAGACCTACCAGAACTTTGTGCGGCGATGGTTCAAA
TTAACCGATCTCGAAACGCAGCAGAGTCGTGAAGTGATGCAGTTCCACTA
CACCACATGGCCGGACTTTGGCATTCCCAGCTCGCCGAACGCATTCCTTA
AGTTCTTGCAGCAGGTTCGCGACTCCGGCTGCCTCAGCCGCGACGTGGGT
CCAGCCGTAGTGCACTGCAGTGCCGGAATCGGGCGGTCGGGCACCTTCTG
CCTGGTGGACTGTTGCCTGGTACTTACTGACAAGTACGGAGTGTGCAATG
TGTCCAAGTGCTCTGCGAGCTGCGCAGCTACCGCATGGGCCTCATAATGA
CCGCCGACCAGCTGGACTCTCCTACCAGGCGATCATCGAGGGCATTAAAA
AGCTGCACGATCCCACCTTTCTTGACGCTGAAAACCCTCATTAGCAACGA
CACAGAGACTCCACACTGGATGTAGCTGCCGCCGCCGTTGCCCCACGCGT
TAATCGCTTAATCTGGCCACTGACCCCAAATTCGTGGGTATACTTTCGCT
CAATATATGCGCCGCGGTCCAAGCTTATGGGAGCCTGAAAGATTCGGCAA
AGAAGCTTGAAACAAGGAACGCCTTGA
UFO12569.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp61F-RA | 2115 | CG9181-RA | 124..1220 | 8..1103 | 4915 | 97.2 | Plus |
| Ptp61F-RB | 1835 | CG9181-RB | 124..1220 | 8..1103 | 4915 | 97.2 | Plus |
| Ptp61F-RC | 1796 | CG9181-RC | 187..1181 | 110..1103 | 4405 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1345498..1345864 | 914..550 | 1660 | 98.1 | Minus |
| 3L | 28110227 | 3L | 1345943..1346207 | 549..285 | 1325 | 100 | Minus |
| 3L | 28110227 | 3L | 1346273..1346452 | 290..111 | 885 | 99.4 | Minus |
| 3L | 28110227 | 3L | 1350366..1350476 | 118..8 | 540 | 99.1 | Minus |
| 3L | 28110227 | 3L | 1345016..1345161 | 1056..915 | 275 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:11 has no hits.
UFO12569.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:35 Download gff for
UFO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp61F-RA | 180..1260 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:07 Download gff for
UFO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp61F-RB | 114..1194 | 1..1075 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:09 Download gff for
UFO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp61F-RB | 114..1194 | 1..1075 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:09 Download gff for
UFO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1345498..1345864 | 550..914 | 98 | <- | Minus |
| 3L | 1345943..1346205 | 287..549 | 100 | <- | Minus |
| 3L | 1346277..1346450 | 113..286 | 100 | <- | Minus |
| 3L | 1350372..1350479 | 1..112 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:07 Download gff for
UFO12569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1345498..1345864 | 550..914 | 98 | <- | Minus |
| arm_3L | 1345943..1346205 | 287..549 | 100 | <- | Minus |
| arm_3L | 1346277..1346450 | 113..286 | 100 | <- | Minus |
| arm_3L | 1350372..1350479 | 1..112 | 96 | | Minus |
