UFO12570.5prime Sequence
1087 bp (896 high quality bases) assembled on 2012-11-02
> UFO12570.5prime
AGTCGACATGTTTAAAAAACTTAAGCCAGGTGAAAGTGAGGAGGATGTCC
TGCGAATGGCAGCAGAGTTCAATGCAGAGAGAGCGAAGGATCCCAATTTC
CAGCCTGCAGCGGCTTTTGTGCGTATGGATAAAGCTCCTAAAAAGTCCAT
GTTTGCGCAAAGACGGGAGCAGGCAAAATTGGGGCGTGTTACTTCTACTA
CGGAAAAAAACGAGGAGCAAATTCAACCAGTGCCCAAAGAAATCATCCCT
CAGATTCCAACAAGTGTCCCAAAAGAACGTGGGTCGCATGTCAGCCAAGT
TTTGCTTGATGAAATCCAGGAAAACATCCTGGGCGATGTGAAGGGCAGCA
AGATGGATCCAAGTTCCCTAGGCAATGTGCTGGGCGAATTGGTAGAAAGA
ACTGAAGGAACCAGGAGATCTGCATTTCCAGAAACTAAAAATGTTGACTC
CAGTAAGCCGCTTAGCATTTTCGCCAAACAACTTTTAGGTGCAAAGTCTT
CAACTAAGGAAAAATCAAACAAAGTGTCGGATTTTCCAAGAAATGATACA
AGTTCCATAATAAAAGATGCTAAACTGGGAAAAGAACTGCATCAGGAAAA
CCTAAATGTACTCAAGCAAATGAATGAACAAGATATTTTGACAGAGAAAG
AAAGATTGCTGGCTTCTTTGCATCCCTCGTTGATAGCTTTGTTGTCCAAG
AAACGTCAAACGACACCAAATTCCAAACCGCCCAATCCAAATTCACCTAA
AGTAATAGAAGCACCACCCATGCCCGGCACAGTCTACAAGGGCCCAAGAT
CCACAAATTTCTTCTTTAACCGATGGAAATCCAGCAATTGAGCTGTGCAA
GAGAAGCGATAAAGGAAATTGGCTTACTTTCCATCTAGTCGGAGGGAGCA
AAAATTGGCGGTGGAAGGCGGGGAACATTCCCCGCCCAAGAATAAGTGAA
ATGGAAGCCTGGAAGAGCAGTTCCAAATGCCTCGCCTTTGATTGGGAAAG
TGTGTGGCTACTGCCAACACCCCGCCTCCAAGGGAATAGGGGATGGCCAT
CCGAAACCAAATCCGAAGAAAGCCGGTGAACCTTTAT
UFO12570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32104-RB | 3768 | CG32104-RB | 56..1045 | 8..1016 | 4425 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12398758..12399069 | 444..133 | 1560 | 100 | Minus |
| 3L | 28110227 | 3L | 12398475..12398702 | 670..443 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 12398195..12398413 | 891..672 | 895 | 96.8 | Minus |
| 3L | 28110227 | 3L | 12399141..12399267 | 134..8 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:25 has no hits.
UFO12570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:30 Download gff for
UFO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32104-RB | 25..934 | 8..922 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:40 Download gff for
UFO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32104-RB | 56..965 | 8..922 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:39 Download gff for
UFO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32104-RB | 56..965 | 8..922 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:39 Download gff for
UFO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12398168..12398413 | 672..922 | 94 | <- | Minus |
| 3L | 12398474..12398702 | 443..671 | 99 | <- | Minus |
| 3L | 12398760..12399067 | 135..442 | 100 | <- | Minus |
| 3L | 12399141..12399267 | 8..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:40 Download gff for
UFO12570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12391268..12391513 | 672..922 | 94 | <- | Minus |
| arm_3L | 12391574..12391802 | 443..671 | 99 | <- | Minus |
| arm_3L | 12391860..12392167 | 135..442 | 100 | <- | Minus |
| arm_3L | 12392241..12392367 | 8..134 | 100 | | Minus |
