UFO12571.5prime Sequence
873 bp (706 high quality bases) assembled on 2012-11-02
> UFO12571.5prime
AGTCGACATGGCAAGTTCGCTCAACAAGACGAGACACAGGCGCAGACTGG
CTGCGATCTCGTTCCTATCGAATATCTCGTTAGATGGCACCCATCGGGAC
ACCAAATTCGGCGCAACATTCGGCAGCAGCCTGCTCTGCAACCAGAATAA
GAACCCATCCTCGCTGGGACTCGGCTCGGGGGGCTTTCATCCGCACTATC
AGCAGCACCACCATCAGCGCAGCCACTCGGCGACGCACCACAACCACCAG
AAGCGGCATCACACGCAGCAGCAGCAGCAACAGCAACAACAGCAACACAC
CCAACAGCAGCAGCAGCAGCAGCAACATCAGCAGCAGCATCAGCAGCAGC
AGCAACACCAGAATGGCGCCCTCTGTTCGCCGCTCCTCTGCAGCGCCGAT
GTCCACATGGGCATCGATGGCGGCATCGGGCTGGGATTGGGACTGGAGGA
CTGCACCACCGGTGCCAGCGATGGGGACGGGCATTTTAGTGAAACTGAAA
ATATGGGTCAATACCTGATGAACGTCCTGCCGGCCGCCGATCACAATCGC
AGCAGCATTGTGCCGGCCGAGAGACGCAACATAAAGCGCCCGACCTCGTC
GGGTCGTCATAACCACCAGGCACCGGGCATGGAATATGGCATAAGCTCCA
CAGCAGCAGCAGCAGAGCACAGTGAGAGCACAGCGCAGCCGAGTGGCGCG
CACGAGACGGTGCAATGCACATCGAACGCAAACGTCAGGCACGCGGCGGC
TGCGCGACGCGAGTGCTAGCCTCAGGAGCATGCGGAGTACGCGAGGGCTA
TCGGGCACATGGATCACAACGCGCGATGTCACAGAACGCGTGAGAGGTTC
AGTGACATGGCAGAGTGTGTGAT
UFO12571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6191-RC | 3439 | CG6191-RC | 881..1550 | 8..671 | 3200 | 99.1 | Plus |
| CG6191-RB | 3745 | CG6191-RB | 881..1550 | 8..671 | 3200 | 99.1 | Plus |
| CG6191-RA | 3439 | CG6191-RA | 881..1550 | 8..671 | 3200 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13590823..13591444 | 629..8 | 3110 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2479 | 177..366 | 378 | 70.7 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 981..1033 | 188..239 | 109 | 69.8 | Plus |
UFO12571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:31 Download gff for
UFO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 870..1557 | 1..680 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:43 Download gff for
UFO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 873..1560 | 1..680 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:43 Download gff for
UFO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 873..1560 | 1..680 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:43 Download gff for
UFO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13590762..13591449 | 1..680 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:43 Download gff for
UFO12571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9478267..9478954 | 1..680 | 97 | | Minus |
