UFO12573.5prime Sequence
1075 bp (920 high quality bases) assembled on 2012-11-02
> UFO12573.5prime
AGTCGACATGGGTTTCATTGCGGAGCGAAAGCCGCGTGTCAACAAGACGT
TGATCTCGCTCAAGTTTGTTGTGTTCTTCGTAATAACCGGTCTTACAGCT
TTGCATGTTTTGCATGCCACCAAGCCACTGTTGCTGGGTCTAAACTTCTC
GGAATACCGGACCATTACTATTTTGGCGCCATTCGTCTCCATTTTGGGTC
CTTTGATCGCTGGTCCCTGGGCAGATCGATTGGCAGCCAAGAACCCCAAT
ACTTTTGGAAAGACTCTGCGAGTGCTAACTGCCGTCTTCTTGCTGATCTC
GGCCTTCATATATGCCTTTCTGTTTGCCGTGCCGGAAGTTACCCGAAGGG
GAGAGATACGTGAGCCGTTGGTCAGCTTTGGCTGCGATGAAACTGGAGGA
TTCTTGTTCCAGGAGCGCTGTGGCTCGAACGCCACTTGCAGTCGGTGGGA
TCAGAAGGAGGGCAAAATCAACCTGACGCGTTGCACCTACAGTTGCCAGA
ATCCCAAGCTCTATGAGCCCCTCTATGTGGCTTGGTTGGCTGAGGTACCC
ACGGTGGCTCCTTCAACCGAGCAGAGTTCGGAGTTTGATTACGAAGATGA
GGGGAGTACTGCGGTAACCGAAAGTTTGCGCACCAGGAGGGACGTGGAGA
GCTCGGATCCGGCAGATAGTGCTGGTGTGGAGGCCATTAGTGGTGAGGTT
CCTCTTCACCGGTCCATCACGCAGTCAAAAAACCCCCCACCAAGGTGTAC
GTCCAGCCTCCTCATGTCTGTCTAACCGAAAGAACCAGAACGGCGAGGAT
GTGGTGAAGCACTGCCACGCCTACACTGAGACACCACTAGTGTGGTGATG
GATGCCCTTATGGGCTCAGCGATCAGTTCAGGAGAGCCACTACGATGACT
ACGATGACGGTGCCAGTACCCACTTGAGGTTTCCAGTGCCACGCCCGAGG
AGCAGGTGAATTACATGAAGGACTTCAAGCACTACTGGGATGACGGCAAC
TGCAAGCCATGATCGAATGCCAAGTGGGTGATTCCGTGCATGAAACAAAG
TGTGCTTTCGGACGCGAGTGTAACA
UFO12573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP1173-RB | 3066 | CG10121-RB | 202..1276 | 8..1072 | 4785 | 97.2 | Plus |
| SP1173-RA | 2832 | CG10121-RA | 340..1414 | 8..1072 | 4785 | 97.2 | Plus |
| SP1173-RD | 3661 | CG10121-RD | 797..1871 | 8..1072 | 4785 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6691465..6692305 | 926..89 | 3840 | 98.5 | Minus |
| 3L | 28110227 | 3L | 6692370..6692453 | 91..8 | 420 | 100 | Minus |
| 3L | 28110227 | 3L | 6691247..6691387 | 1063..928 | 270 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:32 has no hits.
UFO12573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:37 Download gff for
UFO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RA | 312..1392 | 1..1074 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:22 Download gff for
UFO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RD | 792..1872 | 1..1074 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:24 Download gff for
UFO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RD | 792..1872 | 1..1074 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:24 Download gff for
UFO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6691465..6692304 | 90..927 | 98 | <- | Minus |
| 3L | 6692372..6692458 | 1..89 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:22 Download gff for
UFO12573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6685472..6685558 | 1..89 | 95 | | Minus |
| arm_3L | 6684565..6685404 | 90..927 | 98 | <- | Minus |
