UFO12574.5prime Sequence
1093 bp (952 high quality bases) assembled on 2012-11-02
> UFO12574.5prime
AGTCGACATGCGGCGTCACTTACAGTGGAGCATTAAGCAGCTAACAGCGA
GTTACTCAGATGGTCAGCTGTCTCCTCGCCGGGTGACCGAAGATGCTCTG
CAAGATGCCCTGCGGTGGAAGACACTGAATGCCTTTGTGCGCCTCACGCC
GGAACAGGCGGGGCAGCAGGCCCAGGACGCGGAGCAGCGCTATAAGCTAA
GGCAACCGATTAGTGATCTTGATGGAGTCACCATTGCCATCAAGGACAAC
TTTTGCACCAAAGATGTACACACCACCTGTGCCTCACGGATGCTGCAAGA
CTTTGTGCCTCCCTATGATGCCACTGTGTGCTCCAGACTTAAACAAGCCG
GCGCTGTAATTCTGGGCAAGACGAATATGGATCAGTTTGCCATGGGCGCC
GGCACTGTGGACTCCCTGTACGGGCCGACTAAGAACATCTGGAGCGAGGA
CCTTAACAAGGATCACTGGCGCATCGCGGGCGGCAGTTCTGGAGGCTCTG
CATCCGCCGTAGCCGCGGGTCTTTGTTATGCAGCAATTGGTTCGGACACG
GGTGGCTCCACCCGAAACCCGGCTTCGTACTGCGGCGTGGTGGGTCTAAA
GCCCACCTACTGGCCTCGTCTCCCGCCACGGTCTTATTCCGCTGGTCAAT
TCCATGGACGTGCCCGGCATTTTTGCCCGCTCCGTCAGCGATTGCGTGGC
GGTACTGAATACAGTGGCAGGGCCGGATAAACTGGACTCCACAACCATCA
CGCAGCCTTTTACCAGGTTACATCTGCCGGAAGTTGGGCAAATTGACCTG
AGCACTGTGCGCATAGGAATACCAAAGGAATACCATTGCCACGGTCTTTC
CGCCGAAGTTCTGGAAACGTGCTCTAAGTGACCGATTGCTGGAGTGTAGC
GGTGCCTCCGTCAGAACAAGTTTCCCTGCCCAATACGGCAAGCAAGTATA
TTCGTGTAGACCAATTCTTAATCCGTGACGAGTGGCCCGCAACAATGGGC
AAAGGTAACGAATGGAAATCGAAGATACGCCATCTAGGCAAACAGAACCA
AAGCGCAGCACGGGAACAATGGTAATGCCCCTTAATCCAGGGC
UFO12574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gatA-RA | 1661 | CG6007-RA | 107..1091 | 8..994 | 4645 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19026744..19027204 | 994..532 | 1860 | 96.3 | Minus |
| 3R | 32079331 | 3R | 19028417..19028668 | 289..38 | 1260 | 100 | Minus |
| 3R | 32079331 | 3R | 19028115..19028358 | 531..288 | 1220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:35:37 has no hits.
UFO12574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:38 Download gff for
UFO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 80..1035 | 1..958 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:26 Download gff for
UFO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 80..1035 | 1..958 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:27 Download gff for
UFO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gatA-RA | 101..1056 | 1..958 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:27 Download gff for
UFO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19026779..19027204 | 532..958 | 97 | <- | Minus |
| 3R | 19028115..19028357 | 289..531 | 100 | <- | Minus |
| 3R | 19028418..19028665 | 41..288 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:26 Download gff for
UFO12574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14852501..14852926 | 532..958 | 97 | <- | Minus |
| arm_3R | 14853837..14854079 | 289..531 | 100 | <- | Minus |
| arm_3R | 14854140..14854387 | 41..288 | 100 | <- | Minus |
