UFO12575.5prime Sequence
1074 bp (929 high quality bases) assembled on 2012-11-02
> UFO12575.5prime
AGTCGACATGGATGTTGGTGGCCAGGAAACCACCTATGAGCCGCTGGACG
GACGTGGTTCCGGGCGTTCGAGGAGCAGTCATTCCACAACCGGATCCGGC
CTGAGGCGTCCAGGCAGCATGGACAGTCCGGAGTTCGATAACCGTGCACC
CAAGGATCAGAGGCACTCCGTCTACCTGGCCCTACTGGCAGCGGGCATTG
GTTTTGTGTTGCCCTACAATAGTTTCATTATTGCGGCGGACTACTGGCAG
GCACGATTCCCGGGTCGCCCGGTAGCCCTGGACATGTCGATGACATACAT
CTTCGTTGCCTTCGGCACCGTTTTGATGAACAACATTGTGCTATCGGTGG
CACCGTTCCAGTCGCGAGTGCTCTTTGGCTACATGATATCCTTCACCACA
CTGATCTTTGTCGCGGTGTGCGAGGTGGCTTGGCATATGTTCGCCACAAA
TACCGCCTATTTGGTGAATATGTCAGCTGTTGCCCTGACCGCCATCGGAT
GTACTGTGCAGCAGTCGAGCTTCTATGGATTCGCCTCCATGCTGCCCAAG
CAGTATACCCAGGCGGTGATGGCCGGCGAGAGTATCGCCGGTTTCCTGGT
GTCTTCCAATCTGGTCGTTACCAAATTGCTGATTAACAACGATCGCGTGT
CCACGGTGATCTTCTTTTTGACCTCAACGCTCTACATACTCTTCAGCTAC
CTGTTGCATGTGGCCACCATTAACTCGCCGTTTGTGCGGTTCCATGTGGA
GGCCTGCTCCAAGATCGTTTTGCGGCCGGATGAGCAGGAGATTGATGGAG
TCCCAAGTAGTACTCGATATGGTGTGCTCTCGATGGACGGTACCCACACC
ACGACCACATCGGTTGGAACTTGAAGGCAACTGGGAAAATACTGCTTAGT
TTTAGCAATCCCGTCTACGAGCTATCCACCGACTGCGCAAGTACATGGAG
CCTCGACGCTGCCGACTCCGCCCGCCCAGCTCAGACAGAATGCCGACGTG
CTTCAAGGGAACCGTACTGCCGCCTTGCCGCCAAAAGTGGGTGAATCGGA
GGATCGACCAAGGAAGGCCAGGAA
UFO12575.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent3-RC | 3363 | CG11010-RC | 403..1329 | 7..936 | 4415 | 98.6 | Plus |
| Ent3-RA | 2839 | CG11010-RA | 403..1329 | 7..936 | 4415 | 98.6 | Plus |
| Ent3-RB | 3360 | CG11010-RB | 403..1326 | 7..936 | 4360 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12854450..12855013 | 221..784 | 2805 | 99.8 | Plus |
| 3L | 28110227 | 3L | 12854048..12854263 | 7..222 | 1080 | 100 | Plus |
| 3L | 28110227 | 3L | 12855186..12855326 | 783..928 | 445 | 91.8 | Plus |
Blast to na_te.dros performed 2014-11-28 18:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 8314..8355 | 994..1035 | 129 | 78.6 | Plus |
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 432..473 | 994..1035 | 129 | 78.6 | Plus |
UFO12575.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:39 Download gff for
UFO12575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent3-RA | 388..1319 | 1..936 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:30 Download gff for
UFO12575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent3-RA | 398..1329 | 1..936 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:31 Download gff for
UFO12575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent3-RA | 398..1329 | 1..936 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:31 Download gff for
UFO12575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12854043..12854263 | 1..222 | 98 | -> | Plus |
| 3L | 12854452..12855013 | 223..784 | 99 | -> | Plus |
| 3L | 12855188..12855336 | 785..936 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:30 Download gff for
UFO12575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12847143..12847363 | 1..222 | 98 | -> | Plus |
| arm_3L | 12847552..12848113 | 223..784 | 99 | -> | Plus |
| arm_3L | 12848288..12848436 | 785..936 | 92 | == | Plus |
