UFO12576.5prime Sequence
1048 bp (963 high quality bases) assembled on 2012-11-02
> UFO12576.5prime
AGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGCATGTGGCCC
GCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTGGAGACGGTC
ACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTCGCTGTCCAA
GCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGGGCAACATCG
GGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTAGCTATCAAA
GTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGACGGACATTAC
CCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAACAGATCTTCT
CGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCCCAGTGCGAC
AAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGATGGCAAGGA
TGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGTTGTGGCGAC
AGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAGGGCAAGAAG
CTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGCTGGACGTGG
CAATAAGAAACAGACAGACCAAAATAAGGGTGCCGCACAATACGCGCGAA
CAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATGCCCAACAA
CGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGCCGGATACG
GAATTCAGCTAGTCAAAATACAGACTGTGGGCGAGGCTGACATCGATTTG
CGGCATAGCACTCTCGATGCGCACCACCAAGTTGTCGATATGGGAGTGTA
CGATACACGTCCGCCACGTCCTAACTCGATCCGATTGAACCGAAGCTATC
AGTCGGAGCAGATCGATGGTAGCACCTACGAGCAGCTTCACGCAGATGAT
ATTCAGTATGCTGCACGTTCGCACGGCATGGCTGGTGCCCAGTGATGCAC
ATGCAGCATTAGCAGATGTATGACGCCGCATGCATCAGTCGCATGCCT
UFO12576.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-RB | 2815 | CG4636-RB | 261..1307 | 7..1046 | 4835 | 98 | Plus |
| SCAR-RF | 3037 | CG4636-RF | 363..1427 | 7..1046 | 4645 | 96.3 | Plus |
| SCAR-RD | 3118 | CG4636-RD | 363..1192 | 7..837 | 4130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10977961..10978706 | 7..753 | 3685 | 99.9 | Plus |
| 2L | 23513712 | 2L | 10980444..10980661 | 837..1046 | 550 | 89.9 | Plus |
| 2L | 23513712 | 2L | 10978880..10978963 | 754..837 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:51 has no hits.
UFO12576.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:39 Download gff for
UFO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 245..1302 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:34 Download gff for
UFO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 253..1310 | 1..1048 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:35 Download gff for
UFO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 253..1310 | 1..1048 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:35 Download gff for
UFO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10977953..10978706 | 1..753 | 99 | -> | Plus |
| 2L | 10978880..10978963 | 754..837 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:34 Download gff for
UFO12576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10977953..10978706 | 1..753 | 99 | -> | Plus |
| arm_2L | 10978880..10978963 | 754..837 | 100 | -> | Plus |
