UFO12577.5prime Sequence
1071 bp (985 high quality bases) assembled on 2012-11-02
> UFO12577.5prime
AGTCGACATGAAATGTAAAAGCTGGTCCAACAAAATTAACAACTACGTTG
TGCGCAAAATAAAGTCTATCAAGATCAACGGTACACAGCAACAGCTCCAA
TTGCCAGGCAGCGGCGCTAGCGGAATCGCAGCGGCAGCCGTAATCACGGT
AGCATCGGATTGCGGCGAAAACTGCAGCAGTAACGGCACCGAGCATCAGC
AGCACTTCAACATTGCTACCACCACAGCAACTTCGGCGACAGAGGCAACA
ATGCCGGCTATGGCCAAGGAGAAAGCATCAGCAACAGTGTCCTTGGGCGA
GTCGAATTTCAGAGATATCAACCTAAAAGACTTGGCCGTGGTCGTCGAAG
CGGCATCGCGGCTGCACCACCAGCAAAACGTATGCGGCTGCGGAGCGGTA
TCGTCTACTGAGAACAACAACAACAGTCGCTACGGCAGCAGCAAGTATCT
GACAAACGGCCACACGTCGCCTTTGGCGGCAGCGGTTGCTAGCAACAGTT
CGTCGGTGGCCACGACACCGCATTGCAGAATGTTGCACAACTGCAGTCTG
CAGCAGTACCAGAATGACATAAGGCAGCAGACGGAGATATTGGACATGTT
GCGGCAGCAGCATCAGCAGGGCTACCAGTCGCAGCAACAGCAACAACAGC
CGCAGCAGCAGCAGGAACAACAGCAGCAGCAGGAGCAATCGCAGCAGCAG
CAACAGCTACAGAATCCTGCGCCCAGGAGGTCTCCGAATGATTTCATTTT
CGGTCGTTACATAGGCGAGGGCAGCTATAGCATAGTTTATCTGGCCGTGG
ATATACACTCTCGCCGCGAGTATGCAATTAAAGTATGCGAGAAGCGGCTG
ATCCTGCGCGAAGGAAGCAGGACTACATCAAGCGTGAACGCGAGTGATGC
ACAGATGACCAACGTTCCCGGCTTCGTAACCTGTCGTGCACTTCAGGACA
ACGTCTCTTTACTTGTGATGACGTACGCGCGAAATGCGACTGTTGCATAC
ATCACGCGTGACCTATTGCGTGCTGCACGGCCCTTACCTGCAGCTTCGCT
TGACTGCAGCATGGACCGCGT
UFO12577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdk1-RJ | 4959 | CG1210-RJ | 373..1382 | 7..1004 | 4720 | 98.6 | Plus |
| Pdk1-RD | 3706 | CG1210-RD | 373..1382 | 7..1004 | 4720 | 98.6 | Plus |
| Pdk1-RH | 4347 | CG1210-RH | 427..1372 | 71..1004 | 4400 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 135456..135843 | 72..459 | 1940 | 100 | Plus |
| 3L | 28110227 | 3L | 135966..136339 | 458..831 | 1855 | 99.7 | Plus |
| 3L | 28110227 | 3L | 141765..141887 | 823..941 | 400 | 95.9 | Plus |
| 3L | 28110227 | 3L | 129822..129888 | 7..73 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2686 | 359..708 | 268 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2660 | 413..718 | 190 | 56.5 | Plus |
UFO12577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:40 Download gff for
UFO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk61C-RD | 366..1380 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:37 Download gff for
UFO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RD | 368..1382 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:37 Download gff for
UFO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RD | 368..1382 | 1..1004 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:37 Download gff for
UFO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 129817..129888 | 1..73 | 94 | -> | Plus |
| 3L | 135458..135842 | 74..458 | 100 | -> | Plus |
| 3L | 135967..136335 | 459..827 | 100 | -> | Plus |
| 3L | 141770..141958 | 828..1004 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:37 Download gff for
UFO12577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 135967..136335 | 459..827 | 100 | -> | Plus |
| arm_3L | 129817..129888 | 1..73 | 94 | -> | Plus |
| arm_3L | 135458..135842 | 74..458 | 100 | -> | Plus |
| arm_3L | 141770..141958 | 828..1004 | 92 | | Plus |
