UFO12578.5prime Sequence
1044 bp (914 high quality bases) assembled on 2012-11-02
> UFO12578.5prime
AGTCGACATGGAGAAGTTTCCGCTGAAGGGCAGCAGGGAGGCCGCCGCGG
AGGGCAACAGCTACATAACCGCCTACCAAACGGTCATGAAAAAGTCGAAC
GGCCACACAAACGGAGCCGGCGGCGACGGCGACCTAGACGGAACTTTTCG
TGACCATCCGCTGGCGCAGCACACCAAACTGACCACCTCGCTGACGGCGG
CGGGCACCGACGACGAGGATATGATTGACATCACACCCCGCTCCAGTCCA
GGCGATGTGATCGGCGGCGGCGGAGGAGGAGGAAGCAGCAGTGGCTATCA
CCGGGAAACGGCCACCGAATCGGACACCGAACGAGATTTCGGACACTCTG
GCGGCAACGGCGGCGGCAATCACCACAATCAGCGGACAATGCACCAGCAT
GTGCCAACTCACAGTGCCTTCGGCGATCCTATGGACGGAGCACTATCCTT
CTATGGTTCCTCGGACGTGCAAGATGATATTCCTGGCATTGGGCAGTACG
AAGATTTTCACACCATTGATTGGCAGCGGGACATTGCCCGTGATCGGATG
CGACATCGCTACATAGTCAAGAAGCGACAGGACTCCTTGTGGGATCTGAT
AAAGGGTTCCATTGATGCCGGATCTGGCTGGCTATGTGTTTTACTCGTCG
GAATTGCCGCAGGCTGTGTGGCGGGCATGGTGGACATTGGAGCTAGTTGG
ATGTCGGATCTAAAGCATGGCATTTGTCCACCCGCCTTTTGGTTTAACAG
GGAAACAATGCTGCTATCCGGCCAACAGTCAGTATTTGAGTGCACTGCTC
GACGTGGAAACCTGGCCAGAGATCTTTGGTTGGATCGAATGCACCGACAT
ATATCGTCGCTACATCTGTATGTGCTGTGGCTTGCTTTTGCTCGCTCACG
CTCCTTGTGCGATGTGCCTAGCTGCGATCGATCGAATAAGCATCTGCGCT
CATACCGCTATAGATGACTGTGACATCGTGTTAGCTGCTGTCCTGCTCAT
GCAGAGACTGTCATGCATGATGACATTTCAGTTCAATGCATGGC
UFO12578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-c-RD | 3962 | CG5284-RD | 379..1302 | 8..912 | 4095 | 97.6 | Plus |
| ClC-c-RC | 3718 | CG5284-RC | 379..1302 | 8..912 | 4095 | 97.6 | Plus |
| ClC-c-RB | 3319 | CG5284-RB | 63..903 | 91..912 | 3665 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16091514..16091859 | 93..438 | 1730 | 100 | Plus |
| 3L | 28110227 | 3L | 16092751..16092940 | 600..789 | 855 | 99 | Plus |
| 3L | 28110227 | 3L | 16092531..16092699 | 437..605 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 16090832..16090918 | 8..94 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:36:03 has no hits.
UFO12578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:41 Download gff for
UFO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 371..1291 | 1..905 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:42 Download gff for
UFO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 371..1291 | 1..905 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:41 Download gff for
UFO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 371..1291 | 1..905 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:41 Download gff for
UFO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16090824..16090918 | 1..94 | 95 | -> | Plus |
| 3L | 16091516..16091858 | 95..437 | 100 | -> | Plus |
| 3L | 16092532..16092698 | 438..604 | 100 | -> | Plus |
| 3L | 16092756..16092959 | 605..804 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:42 Download gff for
UFO12578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16083924..16084018 | 1..94 | 95 | -> | Plus |
| arm_3L | 16084616..16084958 | 95..437 | 100 | -> | Plus |
| arm_3L | 16085632..16085798 | 438..604 | 100 | -> | Plus |
| arm_3L | 16085856..16086059 | 605..804 | 96 | -> | Plus |
