UFO12579.5prime Sequence
1012 bp (924 high quality bases) assembled on 2012-11-02
> UFO12579.5prime
AGTCGACATGCTGGCTGCTTTGATTTACACTATTTTGGCGATTTTACTGA
GTGTTCTGGCCACGTCCTACATATGCATTATATATGGAGTCAAGCGCCGC
GTTCTGCAGCCCGTTAAAACAAAGAATTCAACCGAAATCAATCACAATGC
TTATCAAAAATATACCCAGGCTCCAGGACCACGACCATGGCCCATCATTG
GTAATCTTCATCTGCTGGATCGATACAGGGATAGTCCCTTTGCGGGATTC
ACGGCGTTGGCACAGCAATACGGAGACATATACTCCCTGACCTTCGGACA
CACCCGCTGTCTGGTGGTGAACAACTTGGAGCTGATCCGCGAGGTGCTCA
ATCAAAATGGCAAGGTGATGAGCGGGCGGCCAGACTTCATACGATATCAT
AAACTATTTGGTGGCGAGCGGAGCAATTCGTTGGCTCTGTGCGATTGGTC
ACAGCTGCAGCAGAAGAGAAGGAATCTGGCCAGGCGTCACTGCTCGCCCA
GGGAATTTTCCTGCTTCTACATGAAAATGTCCCAGATTGGTTGCGAGGAA
ATGGAGCACTGGAATCGGGAGCTGGGAAACCAACTCGTTCCTGGAGAGCC
GATCAACATCAAGCCTCTGATTCTGAAGGCCTGTGCAAATATGTTTAGTC
AGTACATGTGTTCGTTGAGGTTCGACTACGATGATGTGGACTTCCAACAG
ATTGTTCAATACTTCGATGAGATATTCTGGGAAATCAATCACGGACATCC
GCTGGATTTTCTACCCTGGCTATATCCCTTCTACCAGCGACACCTGAACA
AGATCATCAACTGGTCCTCGACTATCAGGGGATTCATAATGGAAAGGATT
ATCCGGCATCGGGAGCTGAGCGTCGATTTGGATGAACCAGATCGGACTCA
CAGATGCTCTACTAAAGCCTGCCTGAAGATAAGATGTCTCCGGAACACGA
ATATCCTCCATGTCTGAGAATCATATGGGTGACATCACCGGTGGAAATCT
AGTATGGCTATG
UFO12579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spo-RC | 2489 | CG10594-RC | 354..1358 | 8..1004 | 4595 | 97.8 | Plus |
| spo-RA | 2187 | CG10594-RA | 52..1056 | 8..1004 | 4595 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5591265..5592218 | 955..8 | 4465 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:36:09 has no hits.
UFO12579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:41 Download gff for
UFO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 353..1267 | 1..913 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:45 Download gff for
UFO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 45..959 | 1..913 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:45 Download gff for
UFO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 45..959 | 1..913 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:45 Download gff for
UFO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5591311..5592225 | 1..913 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:45 Download gff for
UFO12579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5584411..5585325 | 1..913 | 99 | | Minus |
