UFO12582.5prime Sequence
1057 bp (899 high quality bases) assembled on 2012-11-02
> UFO12582.5prime
AGTCGACATGGATGATGCTACCTCCCAAAACTCGGCTGCAACGCCCATGA
CACGGGAGAACATTCCGTTGCTGAATCGTCAGCGAAATCGCTGGTATCTC
TTTAGCTGCTGGCGAAAATGGTTCCGGCCACGGGAGCTGAGAGCCCGCAC
CGTAAATCTCGGACGGGTCAATACGGAGAAGTTCCCACCGAACGAGATCC
GGAATCAGAAGTACAACTTCATCACCTTCCTGCCGCTGGTGCTGTTCGAG
CAGTTTCGCTTCTTCCTCAACTTGTACTTCCTGCTGATGGCGCTGTCGCA
GTTCATTCCGGACATCCGGATCGGTTACCCGTACACCTACTGGGGTCCGC
TCGGCTTCGTGCTAATGGTCACCATTTGCCGAGAGGCGGTCGACGATCTG
CGTCGGCATCAGCGGGATCACGAGGTAAACTCGCAGAAGTACAAGAGACT
GTCGTCCACCAACATCAGCGGCTACGAAATGGTTCCCAGCTCCAAGCTGA
AGGTCGGTGACGTCATAATCGTGGAAAAGAACGAGCGCGTGCCAGCGGAT
CTGATCCTGCTGCGCACCAGCGATCGGAGCGGATCGGTCTTTGTTCGTAC
GGACCAACTTGATGGCGAGACGGACTGGAAACCACGTCTCGCCGTTCCGT
ATACTGAAAAACTCAGTCGAGATTCGGAGCTACATAGCATCGATGCCAGT
TTTTACGTGGAGAAGCCACAGAAACGACATTCACAGCTTCATCGCCACCT
TCTGCATGGGCAGACGGCAGCGAAAGACACCGGTCTCAGTGTGGAGAATA
CCCTGTGGGCCAACCACCGTCGTATGCGCAGGAACAGCCACAGGAATTGT
CATATATACTGGCTGCGAAACTCGCAGCGTGATGAATAACTCCACAGCCA
AGTCCAAAGTTGGACTGCTAGACATGGAGAATTAAGGCGATTGACCTAAC
GTTCTGTTCTGCACCGTGCTTGGAACTGTCGCTAGTCATGATGATGCTTA
AGGGTTTCCGGCGACCTGGAATAAATACTGTTCCGCTTCGTCTTTTTTTC
TACATCA
UFO12582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31729-RA | 4167 | CG31729-RA | 299..1328 | 6..1041 | 4715 | 97.8 | Plus |
| CG31729-RD | 3999 | CG31729-RD | 381..1312 | 104..1041 | 4225 | 97.6 | Plus |
| CG31729-RC | 3963 | CG31729-RC | 193..1124 | 104..1041 | 4225 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13297617..13298439 | 104..930 | 3795 | 98.9 | Plus |
| 2L | 23513712 | 2L | 13296646..13296745 | 6..105 | 500 | 100 | Plus |
| 2L | 23513712 | 2L | 13298559..13298615 | 951..1008 | 225 | 96.6 | Plus |
Blast to na_te.dros performed 2014-11-28 18:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dwil\Mar | 610 | Dwil\Mar MAR 610bp Derived from AF518731. | 484..532 | 239..287 | 110 | 69.4 | Plus |
UFO12582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:36 Download gff for
UFO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RA | 293..1346 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:14 Download gff for
UFO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RA | 293..1346 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:16 Download gff for
UFO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31729-RA | 294..1347 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:16 Download gff for
UFO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13296641..13296745 | 1..105 | 97 | -> | Plus |
| 2L | 13297619..13298456 | 106..950 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:14 Download gff for
UFO12582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13296641..13296745 | 1..105 | 97 | -> | Plus |
| arm_2L | 13297619..13298456 | 106..950 | 98 | -> | Plus |
