UFO12583.5prime Sequence
1093 bp (942 high quality bases) assembled on 2012-11-02
> UFO12583.5prime
AGTCGACATGGCCCCAGTTCAGAAAATAAATGTTTTTGGTGAAGCCGATA
CTGCAGTATCCTCCAAGGATGTGTATTGCATTTGTCGCCAGAGCCACATC
AATGGATTTATGATATGCTGTGACAATTGCAACGAGTGGTTCCATGGAGA
TTGCATCGGATTGCCGGCAAATATCGGGGAACAGCACGACACCTACTACT
GCACCGAGTGTTTTCGCAAAAATCCACTATTAAAGTGCACCTATAAGAAG
AGTCCATCCACCACAGGAGTTCCAAAAACTCCAAAAACTCCAAAAACTCC
AAAAACTCCAAAAAATCCAAAAACTCCAAAGACTCCAAAAAATTCAAAAA
CTCCAAAAACAGCCAGGATTATCAATTCAATCGGTGTCAGGCAGAATCCA
CGCAGGAGATCCACGTTCGTCCAGGAGCGTCCTTCAGAAGTACCTAATCC
AAGCAGACAATCCACGAAGTTACAGAAAGCAGTCAATTATGAAAATGCTA
CTGAAGAGCCCACAGAAGACGCTGAAAAGGTGGATCAAAAACCAAAAAAG
ACTGCGAAGAAAAAGAATCCAAAGCCGGAGGATAAAGTCACAGACGATGC
TCAAAAACCAGCAGTTGAAAAGCTCTTCGAATCGAAGGGAACACAATGCA
ACATGTTTAGGGATTGGTCGAAGTATGTTCCTCCCGAAAACTCCAAGAAG
AGGGGCACCTGCTTCACAGTCTTTTGCCAGCAATTGGCACGATCCTGTTC
TAGATACTGTTGCGATGAGTGCGGCAACTTCACCGCAATCACAAACGTAT
TCGCATTAGCCTTTTACCCAATATGCCAGCAATGAAAGTGGCAATGGGAC
ACGTTGGTTTATTGCTTGGCAATGACTTAACAAATAATCAGAAGTCAAAC
AAAAATTCAGAGGCTTCTGAGTCCGAAACGGAAACCAAGCCAAAGTATAA
ACCAAATCGGACGAGAATCGAGATATCGTAGTCGAGCAGTAGCCTGAAAG
AAGCCAGATGTTCCCGACTGCCGCTAAGCGAGCTTCAAGAGACTCTCATC
TAGCTCTAGAGCTCAGGAGTAGTGAGATCTCGATCTTGACGAG
UFO12583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3347-RC | 1908 | CG3347-RC | 97..1130 | 8..1027 | 4790 | 98.3 | Plus |
| CG3347-RB | 2192 | CG3347-RB | 381..1414 | 8..1027 | 4790 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3270044..3270794 | 115..864 | 3705 | 99.9 | Plus |
| 2L | 23513712 | 2L | 3270852..3270933 | 864..945 | 380 | 97.6 | Plus |
| 2L | 23513712 | 2L | 3269913..3269986 | 41..114 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:35:26 has no hits.
UFO12583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:36 Download gff for
UFO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3347-RB | 373..1365 | 1..983 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:18 Download gff for
UFO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3347-RB | 373..1365 | 1..983 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:20 Download gff for
UFO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3347-RB | 373..1365 | 1..983 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:20 Download gff for
UFO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3269809..3269849 | 1..40 | 92 | -> | Plus |
| 2L | 3269913..3269986 | 41..114 | 100 | -> | Plus |
| 2L | 3270044..3270794 | 115..864 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:18 Download gff for
UFO12583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3269809..3269849 | 1..40 | 92 | -> | Plus |
| arm_2L | 3269913..3269986 | 41..114 | 100 | -> | Plus |
| arm_2L | 3270044..3270794 | 115..864 | 99 | -> | Plus |
