UFO12585.5prime Sequence
894 bp (850 high quality bases) assembled on 2012-11-02
> UFO12585.5prime
AGTCGACATGAGAAAGCAAAAGGACGATATGCAGGTCAATGTCGCTGGTC
TGCGCAGAAACATCAAGAACCTTGCGCACAACTACTCCGATGCCCAGGTT
AAAGTGCGTGAGGCAACCTCGAATGACCCTTGGGGTCCTTCGGCTGCCAT
CATGAGCGAGATAGCGGAACTCACCTACAATGTGGTGGCCTTTTCGGAAA
TCATGCAGATGATCTGGAAGCGTCTTAATGACCACGGCAAGAACTGGCGA
CATGTGTACAAGGCACTCATTTTGCTGGAGTATCTGATTAAAACCGGCTC
GGAAAAGGTCGCCCAGCAGTGCAAGGAGAACATCTTTGCCATTCAAACCC
TGCGAGAGTTTGTGTATTTCGAAGAGGGCAAGGATCAGGGCACCCATGTC
CGTGAGAAGGCCAAGCAGCTGGTCACTCTTCTTAAGGATGACGAGCGACT
GAAGAATGAGCGTGTGAAGGCGCAGAAGGCAAAGGAAAGATTCGCCCAGA
ACCCGAGTGGGTTCGGCAGCGATGGCTATATTGATGGACCATCGCAACGA
GACTTGCCGCCAGGCTGGCAGGAGGAGCCGCCTAAATCGGTATCCGAACT
GGAAATGGTTCGTCCCCAGACGGCCGGCGAGGAGGAACTTCAACTGCAGC
TGGCCATGGCCATGTCACGAGAGGAAGCGGAACAGGAGGAGGCCAAGCGA
CGCAGTGATGATGTGCGTCTGCAACTCGCCCTCAGCCAGAGTGAGCAGGA
TTTCAAGGATCCAAACGGACGACCTATTCCTGCGCCCAAGAAGAGACACT
GATGGTCGGCATCACCTGTAGCCGGACGCGACTAGTCAGACCATGACGCG
CGAGGAGCGCGATAGAGGTATGTCGATATGGGGACTTGTAGATT
UFO12585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lqf-RJ | 4183 | CG8532-RJ | 564..1349 | 8..793 | 3930 | 100 | Plus |
| lqf-RI | 3810 | CG8532-RI | 564..1349 | 8..793 | 3930 | 100 | Plus |
| lqf-RF | 3606 | CG8532-RF | 419..1204 | 8..793 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7533504..7534166 | 95..757 | 3315 | 100 | Plus |
| 3L | 28110227 | 3L | 7533355..7533445 | 9..99 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 7534235..7534271 | 757..793 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:36:16 has no hits.
UFO12585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:42 Download gff for
UFO12585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqf-RD | 220..1016 | 1..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:49 Download gff for
UFO12585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqf-RF | 411..1206 | 1..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:48 Download gff for
UFO12585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqf-RF | 411..1206 | 1..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:48 Download gff for
UFO12585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7533345..7533443 | 1..97 | 95 | -> | Plus |
| 3L | 7533507..7534165 | 98..756 | 100 | -> | Plus |
| 3L | 7534235..7534273 | 757..796 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:49 Download gff for
UFO12585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7526445..7526543 | 1..97 | 95 | -> | Plus |
| arm_3L | 7526607..7527265 | 98..756 | 100 | -> | Plus |
| arm_3L | 7527335..7527373 | 757..796 | 97 | | Plus |
