UFO12587.5prime Sequence
981 bp (775 high quality bases) assembled on 2012-11-02
> UFO12587.5prime
AGTCGACATGCAGTCGCTGAAAACGGCAGATTTGCCGGAAAATCCCCGGG
AACATTGCAATTTTATTTCGGCAGCATGTTTTTGGTACACCATGCCGACT
TTTATCAAGGGTCGGAAACGCACATTGGATACCAAGGATCTTTACAGAGC
CTTAAAAGAGCACAAATCTGAGACTCTGGGGAACAAATTGTGCGCTTCCT
GGGAATTGGAACTTGAGAAGACCAAAGGAAAGCCCAATTTGTTGAGAGCC
CTTCTGCGAGTTTTTGGCTGGTACTTCGCACTGCTTGGCCTGGTGCTTTT
CCTGCTGGAATTGGGTCTTCGAACGCTTCAGCCAATCTTCCTGCTGAAAC
TCATCGCCTACTACACACATGGCTCGGAATCGATTGAATCGGCCTATTAC
TATGCAGCTGGAGTGATCCTGTGCAGTGCCCTCAATGTCATTATAATGCA
TCCCTATATGCTAGGCACAATGCATGTGGGACTCAAGATGCGCGTTGGTA
TGTGCAGCATGATCTACCGCAAGGCGTTACGGCTGAGTAAGTCGGCGTTG
GGAGACACCACAGCTGGACATGTGGTGAATCTTATGTCCAACGACGTGGG
ACGTCTCGATATGGCTACCATATTCGTACACTACTTGTGGGTGGGACCGC
TGGAGACCTCTTTATCACATACCTAATGTACCGTGAGATGGAATCGCTGC
TGTGTTGGTGTGCCTCATGTGCTGTCTCCCCTGCAGCTATCTGGGAAAAG
ACATCGTGTGCGCTCAACCGCTTACCACGATGAAGGTACGGTGATGACGA
ATCTCTCGGCATCAGTGATAAATGACGATGGATGCATCGACTATGTGCCT
TGCCGTAGAGAGTATGCATCGCATGGCTACTCTGATCTGTCCCTCTCACT
GTGACCTGCCATTCTATGGGAAGTCGTCGAGTCTACCCGATGGTCTGTCA
GCTATCATCTGTACACGACGTTCTCCAGCAT
UFO12587.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7627-RB | 4778 | CG7627-RB | 451..1205 | 6..749 | 3485 | 98.4 | Plus |
| CG7627-RA | 4525 | CG7627-RA | 206..960 | 6..749 | 3485 | 98.4 | Plus |
| Mrp4-RB | 4726 | CG14709-RB | 947..1098 | 449..600 | 205 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8360209..8360519 | 480..170 | 1555 | 100 | Minus |
| 2L | 23513712 | 2L | 8359636..8359845 | 687..479 | 985 | 99 | Minus |
| 2L | 23513712 | 2L | 8360947..8361033 | 170..84 | 435 | 100 | Minus |
| 2L | 23513712 | 2L | 8361099..8361179 | 86..6 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 9391482..9391592 | 485..595 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:36:22 has no hits.
UFO12587.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:43 Download gff for
UFO12587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7627-RA | 14..796 | 1..766 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:53 Download gff for
UFO12587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7627-RA | 200..982 | 1..766 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:52 Download gff for
UFO12587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7627-RA | 200..982 | 1..766 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:52 Download gff for
UFO12587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8359636..8359844 | 480..687 | 99 | <- | Minus |
| 2L | 8360210..8360518 | 171..479 | 100 | <- | Minus |
| 2L | 8360947..8361032 | 85..170 | 100 | <- | Minus |
| 2L | 8361101..8361185 | 1..84 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:53 Download gff for
UFO12587.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8359636..8359844 | 480..687 | 99 | <- | Minus |
| arm_2L | 8360210..8360518 | 171..479 | 100 | <- | Minus |
| arm_2L | 8360947..8361032 | 85..170 | 100 | <- | Minus |
| arm_2L | 8361101..8361185 | 1..84 | 97 | | Minus |
