Clone BO28919 Report

Search the DGRC for BO28919

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:289
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG43050-RA
Protein status:BO28919.pep: Imported from assembly
Sequenced Size:550

Clone Sequence Records

BO28919.complete Sequence

550 bp assembled on 2011-08-24

GenBank Submission: KX795689

> BO28919.complete
GAAGTTATCAGTCGACATGCCACACGTGAGATTTGGCTACAATGGAAAGC
CAGGAGCACCAAGAACGGGTATGATAACCGCACTTGAGGTAAAGAAATGC
CTCAATATAACAATCCTAAAAAATTTGAATAAAAAAAAGTTATTGGGTGT
TTGGTTTGCATACGCAACAACACCTGTCAATATACCCGCCTACAAACGTC
GTTGTTCATCGTATAATGTTCAGGATAGTACCTTTTTCGATACCCATATC
GTGTATACGGACTACAAGCACGTGACTGTCACCTATGACTGCAAGTACAA
CGATATGACCATGCTGCATGACCTTAAAGTCCGCGTTTTAACACGCACTC
GAACCCCTGTGCTCAAAGATTTAAACCAGGCCTTATACTTTCTAGAGGAA
CATGCATTTTCAATCAAAAACTTGGATTTCCTCAAGTCAAAAGCATTCTG
CTTTGAGTGGTACGTGTTGAAATACCACTCCAAAACACGACCGGGTCGAT
TCAATGCGCCCATCATCCGGGTTTGGGATCATGCAAGCTTTCTAGACCAT

BO28919.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-RA 519 CG43050-PA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-RA 1119 CG43050-RA 203..718 17..532 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13120158..13120366 324..532 1045 100 Plus
2L 23513712 2L 13119996..13120092 231..327 470 99 Plus
2L 23513712 2L 13119843..13119935 138..230 465 100 Plus
2L 23513712 2L 13119696..13119783 52..139 440 100 Plus
2L 23513712 2L 13119496..13119533 17..54 190 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:09:19 has no hits.

BO28919.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-08-24 14:34:59 Download gff for BO28919.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 203..718 17..534 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:33 Download gff for BO28919.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 203..718 17..534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:25 Download gff for BO28919.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 203..718 17..534 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:25 Download gff for BO28919.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13120158..13120366 324..534 99   Plus
2L 13119996..13120088 231..323 100 -> Plus
2L 13119845..13119935 140..230 100 -> Plus
2L 13119698..13119783 54..139 100 -> Plus
2L 13119496..13119532 17..53 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:33 Download gff for BO28919.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13120158..13120366 324..534 99   Plus
arm_2L 13119996..13120088 231..323 100 -> Plus
arm_2L 13119845..13119935 140..230 100 -> Plus
arm_2L 13119698..13119783 54..139 100 -> Plus
arm_2L 13119496..13119532 17..53 100 -> Plus

BO28919.pep Sequence

Translation from 16 to 550

> BO28919.pep
MPHVRFGYNGKPGAPRTGMITALEVKKCLNITILKNLNKKKLLGVWFAYA
TTPVNIPAYKRRCSSYNVQDSTFFDTHIVYTDYKHVTVTYDCKYNDMTML
HDLKVRVLTRTRTPVLKDLNQALYFLEEHAFSIKNLDFLKSKAFCFEWYV
LKYHSKTRPGRFNAPIIRVWDHASFLDH

BO28919.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-PA 172 CG43050-PA 1..172 1..172 936 100 Plus