Clone GM13047 Report

Search the DGRC for GM13047

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:130
Well:47
Vector:pOT2
Associated Gene/TranscriptRpS5a-RA
Protein status:GM13047.pep: gold
Preliminary Size:999
Sequenced Size:873

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8922 2001-01-01 Release 2 assignment
CG8922 2002-01-03 Blastp of sequenced clone
CG8922 2003-01-01 Sim4 clustering to Release 3
RpS5a 2008-04-29 Release 5.5 accounting
RpS5a 2008-08-15 Release 5.9 accounting
RpS5a 2008-12-18 5.12 accounting

Clone Sequence Records

GM13047.complete Sequence

873 bp (873 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075368

> GM13047.complete
CAGGCGTTTGCCTTTGCGCTGACATCGTATCTCGATTTCTTCTGTGACAA
ACATGGCCGAAGTTGCTGAAAACGTGGTGGAGACCTTCGAGGAGCCAGCG
GCACCTATGGAAGCCGAGGTGGCCGAGACGATCCTGGAGACAAATGTGGT
GTCCACCACTGAGCTGCCGGAGATCAAGCTGTTCGGCCGCTGGTCTTGCG
ACGATGTCACCGTTAACGACATCTCTCTGCAGGATTACATCTCGGTGAAG
GAGAAGTTTGCCCGCTATCTTCCCCATTCCGCCGGACGTTATGCCGCCAA
GCGTTTCCGCAAGGCCCAGTGCCCCATTGTGGAGCGTTTGACCTGCTCCC
TGATGATGAAGGGTCGCAACAACGGCAAGAAGCTGATGGCCTGCCGCATC
GTCAAGCACTCGTTCGAGATCATTCATCTGCTCACCGGGGAGAACCCTCT
GCAGATCCTGGTCAGCGCCATCATCAACTCGGGACCCCGTGAGGACTCCA
CCCGTATTGGACGTGCCGGTACCGTCCGTCGCCAGGCCGTCGATGTGTCG
CCCCTGCGTCGCGTCAACCAGGCTATCTGGCTGCTGTGCACTGGAGCTCG
TGAGGCTGCCTTCAGGAACATCAAGACCATCGCCGAGTGCCTGGCTGATG
AGCTGATCAACGCTGCTAAGGGATCTTCCAACTCGTACGCCATCAAGAAG
AAGGATGAGTTGGAGCGTGTCGCCAAGTCCAACCGTTAAGGAGACATCAT
CACCAGCAAAAACAAACTTCTGTCTGTTTTTTTTTATACAAATAACGTGT
GTACACTGAGAAATGATACACTAAAACTAAAATAAACAACAAGATGAAAA
ATTCAAAAAAAAAAAAAAAAAAA

GM13047.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-RA 1105 RpS5a-RA 99..953 1..855 4275 100 Plus
RpS5a.b 873 RpS5a.b 70..873 52..855 4020 100 Plus
RpS5a.a 873 RpS5a.a 70..873 52..855 4020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2014-11-27 00:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17036276..17036678 454..52 2015 100 Minus
chr3R 27901430 chr3R 10725599..10726005 572..166 970 82.6 Minus
chrX 22417052 chrX 17033066..17033251 854..669 930 100 Minus
chrX 22417052 chrX 17034493..17034615 572..450 615 100 Minus
chr3R 27901430 chr3R 10725173..10725344 740..569 545 87.8 Minus
chrX 22417052 chrX 17034095..17034196 671..570 510 100 Minus
chrX 22417052 chrX 17037671..17037721 51..1 255 100 Minus
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-RD 687 CG8922-PD 1..687 53..739 3435 100 Plus
RpS5a-RC 687 CG8922-PC 1..687 53..739 3435 100 Plus
RpS5a-RB 687 CG8922-PB 1..687 53..739 3435 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:55 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-RA 864 CG8922-RA 11..864 1..854 4270 100 Plus
RpS5a-RD 809 CG8922-RD 7..809 52..854 4015 100 Plus
RpS5a-RC 1380 CG8922-RC 578..1380 52..854 4015 100 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 00:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-PD 228 CG8922-PD 1..228 53..736 1076 100 Plus
RpS5a-PC 228 CG8922-PC 1..228 53..736 1076 100 Plus
RpS5a-PB 228 CG8922-PB 1..228 53..736 1076 100 Plus
RpS5a-PA 228 CG8922-PA 1..228 53..736 1076 100 Plus
RpS5b-PA 230 CG7014-PA 38..230 158..736 919 90.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17146798..17147200 454..52 2015 100 Minus
3R 32079331 3R 14900952..14901358 572..166 970 82.6 Minus
X 23542271 X 17143587..17143773 855..669 935 100 Minus
X 23542271 X 17145015..17145137 572..450 615 100 Minus
3R 32079331 3R 14900526..14900697 740..569 545 87.8 Minus
X 23542271 X 17144617..17144718 671..570 510 100 Minus
X 23542271 X 17148204..17148254 51..1 255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:02:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17154896..17155298 454..52 2015 100 Minus
3R 31820162 3R 14641783..14642189 572..166 970 82.5 Minus
X 23527363 X 17151685..17151871 855..669 935 100 Minus
X 23527363 X 17153113..17153235 572..450 615 100 Minus
3R 31820162 3R 14641357..14641528 740..569 545 87.7 Minus
X 23527363 X 17152715..17152816 671..570 510 100 Minus
X 23527363 X 17156302..17156352 51..1 255 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:15:23 has no hits.

GM13047.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2014-11-27 01:43:40 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17037671..17037721 1..51 100   Minus
chrX 17036276..17036678 52..454 100 <- Minus
chrX 17034494..17034610 455..571 100 <- Minus
chrX 17034096..17034194 572..670 100 <- Minus
chrX 17033066..17033249 671..854 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:20 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 1..687 53..739 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:56:40 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 1..687 53..739 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:07:28 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 1..687 53..739 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:21:30 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 1..687 53..739 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:43:40 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RB 1..687 53..739 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:20:58 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 1..854 1..854 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:56:40 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 1..854 1..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:07:28 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 11..864 1..854 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:21:30 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 1..854 1..854 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:43:40 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
RpS5a-RA 11..864 1..854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:43:40 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
X 17148204..17148254 1..51 100   Minus
X 17146798..17147200 52..454 100 <- Minus
X 17145016..17145132 455..571 100 <- Minus
X 17144618..17144716 572..670 100 <- Minus
X 17143588..17143771 671..854 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:07:28 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17042237..17042287 1..51 100   Minus
arm_X 17040831..17041233 52..454 100 <- Minus
arm_X 17039049..17039165 455..571 100 <- Minus
arm_X 17038651..17038749 572..670 100 <- Minus
arm_X 17037621..17037804 671..854 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:56:15 Download gff for GM13047.complete
Subject Subject Range Query Range Percent Splice Strand
X 17156302..17156352 1..51 100   Minus
X 17154896..17155298 52..454 100 <- Minus
X 17153114..17153230 455..571 100 <- Minus
X 17152716..17152814 572..670 100 <- Minus
X 17151686..17151869 671..854 100 <- Minus

GM13047.pep Sequence

Translation from 52 to 738

> GM13047.pep
MAEVAENVVETFEEPAAPMEAEVAETILETNVVSTTELPEIKLFGRWSCD
DVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSL
MMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDST
RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADE
LINAAKGSSNSYAIKKKDELERVAKSNR*

GM13047.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2014-11-27 23:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22379-PA 227 GF22379-PA 1..227 1..228 1170 97.4 Plus
Dana\GF17170-PA 230 GF17170-PA 4..230 3..228 960 79.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2014-11-27 23:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18202-PA 228 GG18202-PA 1..228 1..228 1209 100 Plus
Dere\GG20979-PA 230 GG20979-PA 6..230 4..228 969 80 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2014-11-27 23:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24635-PA 228 GH24635-PA 1..228 1..228 1140 94.8 Plus
Dgri\GH19518-PA 242 GH19518-PA 1..242 1..228 966 75.6 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 23:27:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-PD 228 CG8922-PD 1..228 1..228 1153 100 Plus
RpS5a-PC 228 CG8922-PC 1..228 1..228 1153 100 Plus
RpS5a-PB 228 CG8922-PB 1..228 1..228 1153 100 Plus
RpS5a-PA 228 CG8922-PA 1..228 1..228 1153 100 Plus
RpS5b-PA 230 CG7014-PA 1..230 4..228 929 79.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2014-11-27 23:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15824-PA 227 GI15824-PA 1..227 1..228 1167 96.5 Plus
Dmoj\GI22995-PA 242 GI22995-PA 38..242 6..228 962 79.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2014-11-27 23:27:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20334-PA 228 GL20334-PA 1..228 1..228 1199 99.1 Plus
Dper\GL21699-PA 234 GL21699-PA 7..234 6..228 977 79.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2014-11-27 23:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28883-PA 228 GA28883-PA 1..228 1..228 1199 99.1 Plus
Dpse\GA20032-PA 234 GA20032-PA 7..234 6..228 981 80.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2014-11-27 23:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13336-PA 228 GM13336-PA 1..228 1..228 1209 100 Plus
Dsec\GM25815-PA 230 GM25815-PA 1..230 4..228 979 80.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2014-11-27 23:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20391-PA 230 GD20391-PA 1..230 4..228 979 80.9 Plus
Dsim\GD15697-PA 147 GD15697-PA 50..147 131..228 483 95.9 Plus
Dsim\GD15697-PA 147 GD15697-PA 1..54 1..54 279 98.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2014-11-27 23:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18677-PA 227 GJ18677-PA 1..227 1..228 1164 96.1 Plus
Dvir\GJ24693-PA 241 GJ24693-PA 46..241 33..228 963 89.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2014-11-27 23:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20078-PA 230 GK20078-PA 1..230 1..228 1153 94.8 Plus
Dwil\GK18566-PA 230 GK18566-PA 1..230 1..228 1153 94.8 Plus
Dwil\GK21212-PA 230 GK21212-PA 1..230 1..228 1135 93 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2014-11-27 23:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15619-PA 228 GE15619-PA 1..228 1..228 1209 100 Plus
Dyak\GE26420-PA 229 GE26420-PA 1..229 4..228 980 80.3 Plus

GM13047.hyp Sequence

Translation from 52 to 738

> GM13047.hyp
MAEVAENVVETFEEPAAPMEAEVAETILETNVVSTTELPEIKLFGRWSCD
DVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCSL
MMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDST
RIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADE
LINAAKGSSNSYAIKKKDELERVAKSNR*

GM13047.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
RpS5a-PD 228 CG8922-PD 1..228 1..228 1153 100 Plus
RpS5a-PC 228 CG8922-PC 1..228 1..228 1153 100 Plus
RpS5a-PB 228 CG8922-PB 1..228 1..228 1153 100 Plus
RpS5a-PA 228 CG8922-PA 1..228 1..228 1153 100 Plus
RpS5b-PA 230 CG7014-PA 1..230 4..228 929 79.1 Plus