Clone IP01753 Report

Search the DGRC for IP01753

Clone and Library Details

Library:IP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by: 
Date Registered:2004-07-08
Comments: 
Original Plate Number:17
Well:53
Vector:pOT2
Associated Gene/TranscriptObp83a-RC
Protein status:IP01753.pep: gold
Preliminary Size:846
Sequenced Size:878

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11421 2005-01-01 Successful iPCR screen
Pbprp3 2008-04-29 Release 5.5 accounting
Pbprp3 2008-08-15 Release 5.9 accounting
Pbprp3 2008-12-18 5.12 accounting

Clone Sequence Records

IP01753.complete Sequence

878 bp (878 high quality bases) assembled on 2006-09-13

GenBank Submission: BT029030

> IP01753.complete
TGACTGCGGTTGTCAAACAATTCTTGCGTGTCGGGTGTGTGCAGTATCGA
GTTCTGGCCATAACTACTTCTGCTAAAAGCGAACGAGCTTGTTTTTGTTT
TATTCAGAGCTCGCAAATAAGGCCGAGCCAGGGCACAATTTTTGCTGTTT
CACGGATGGACCAGGAAGGACCACGCAGCAGCGGAAAGGAGCGAAACGGA
AAGAGCCACATTAAAATGGCTTTGAATGGCTTTGGTCGGCGTGTCAGTGC
GTCTGTCCTTTTAATCGCCTTGTCGCTGCTCAGCGGAGCGCTGATCCTGC
CGCCGGCTGCGGCGCAGCGTGACGAGAACTATCCACCGCCGGGCATCCTG
AAAATGGCCAAGCCCTTCCACGACGCGTGTGTGGAGAAGACGGGCGTAAC
CGAGGCTGCCATCAAGGAGTTCAGCGATGGGGAGATTCACGAGGACGAGA
AGCTCAAATGCTACATGAACTGCTTCTTCCACGAGATCGAAGTGGTGGAC
GACAATGGGGACGTGCATCTGGAGAAGCTCTTCGCCACGGTACCGCTCTC
CATGCGCGACAAGCTGATGGAGATGTCCAAGGGCTGCGTCCATCCGGAGG
GCGATACGCTGTGCCACAAGGCCTGGTGGTTCCACCAGTGCTGGAAAAAG
GCCGATCCCAAGCACTACTTCTTGCCGTGAACACCTGGGCCACCTTTCAG
CCCAGTTCCAGTTCCATGGTCCGTGGACCACCCGTTGCCGACCCCGCTCT
ATTTATGTGGTAGTTTAGTTTCTGCTAGTTTTCAATAGCTGTCGAGTAAT
AAACGTAGGCGAGTTGTGCATGCAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAACCAAAAAAAAAAAAAAAAAAAAAA

IP01753.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pbprp3-RA 943 Pbprp3-RA 81..905 1..825 4125 100 Plus
Pbprp3.a 892 Pbprp3.a 147..887 85..825 3705 100 Plus
Os-E-RA 614 Os-E-RA 174..298 408..532 370 86.4 Plus
Os-E-RA 614 Os-E-RA 334..443 565..674 280 83.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1797984..1798241 662..405 1290 100 Minus
chr3R 27901430 chr3R 1798823..1799067 329..85 1225 100 Minus
chr3R 27901430 chr3R 1797767..1797931 825..661 825 100 Minus
chr3R 27901430 chr3R 1801885..1802154 674..408 460 78.9 Minus
chr3R 27901430 chr3R 1800759..1800843 85..1 425 100 Minus
chr3R 27901430 chr3R 1798668..1798743 405..330 380 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:32:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5972370..5972627 662..405 1290 100 Minus
3R 32079331 3R 5973209..5973453 329..85 1225 100 Minus
3R 32079331 3R 5972153..5972317 825..661 825 100 Minus
3R 32079331 3R 5976271..5976540 674..408 460 78.9 Minus
3R 32079331 3R 5975145..5975229 85..1 425 100 Minus
3R 32079331 3R 5973054..5973129 405..330 380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5713201..5713458 662..405 1290 100 Minus
3R 31820162 3R 5714040..5714284 329..85 1225 100 Minus
3R 31820162 3R 5712984..5713148 825..661 825 100 Minus
3R 31820162 3R 5715976..5716060 85..1 425 100 Minus
3R 31820162 3R 5713885..5713960 405..330 380 100 Minus
3R 31820162 3R 5717247..5717371 532..408 370 86.4 Minus
3R 31820162 3R 5717102..5717211 674..565 280 83.6 Minus
Blast to na_te.dros performed 2019-03-16 19:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 335..384 812..763 115 75 Minus
diver2 4917 diver2 DIVER2 4917bp 4867..4916 812..763 115 75 Minus

IP01753.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:05:59 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1797769..1797929 663..823 100 <- Minus
chr3R 1797984..1798240 406..662 100 <- Minus
chr3R 1798668..1798743 330..405 100 <- Minus
chr3R 1798823..1799066 86..329 100 <- Minus
chr3R 1800759..1800843 1..85 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:15:42 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp3-RA 1..465 216..680 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:27:18 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp3-RA 1..465 216..680 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:32:14 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83a-RA 1..465 216..680 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:49:47 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp3-RA 1..465 216..680 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:06 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83a-RC 1..525 156..680 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:57:38 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp3-RA 17..839 1..823 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:27:18 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp3-RA 17..839 1..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:14 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83a-RA 17..839 1..823 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:49:47 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Pbprp3-RA 17..839 1..823 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:06 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
Obp83a-RA 17..839 1..823 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:59 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5973209..5973452 86..329 100 <- Minus
3R 5975145..5975229 1..85 100   Minus
3R 5972370..5972626 406..662 100 <- Minus
3R 5973054..5973129 330..405 100 <- Minus
3R 5972155..5972315 663..823 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:59 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5973209..5973452 86..329 100 <- Minus
3R 5975145..5975229 1..85 100   Minus
3R 5972370..5972626 406..662 100 <- Minus
3R 5973054..5973129 330..405 100 <- Minus
3R 5972155..5972315 663..823 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:05:59 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5973209..5973452 86..329 100 <- Minus
3R 5975145..5975229 1..85 100   Minus
3R 5972370..5972626 406..662 100 <- Minus
3R 5973054..5973129 330..405 100 <- Minus
3R 5972155..5972315 663..823 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:14 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1797877..1798037 663..823 100 <- Minus
arm_3R 1798092..1798348 406..662 100 <- Minus
arm_3R 1798776..1798851 330..405 100 <- Minus
arm_3R 1798931..1799174 86..329 100 <- Minus
arm_3R 1800867..1800951 1..85 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:53:55 Download gff for IP01753.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5712986..5713146 663..823 100 <- Minus
3R 5713201..5713457 406..662 100 <- Minus
3R 5713885..5713960 330..405 100 <- Minus
3R 5714040..5714283 86..329 100 <- Minus
3R 5715976..5716060 1..85 100   Minus

IP01753.hyp Sequence

Translation from 2 to 679

> IP01753.hyp
TAVVKQFLRVGCVQYRVLAITTSAKSERACFCFIQSSQIRPSQGTIFAVS
RMDQEGPRSSGKERNGKSHIKMALNGFGRRVSASVLLIALSLLSGALILP
PAAAQRDENYPPPGILKMAKPFHDACVEKTGVTEAAIKEFSDGEIHEDEK
LKCYMNCFFHEIEVVDDNGDVHLEKLFATVPLSMRDKLMEMSKGCVHPEG
DTLCHKAWWFHQCWKKADPKHYFLP*

IP01753.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 11:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83a-PC 174 CG11421-PC 1..174 52..225 947 100 Plus
Obp83a-PB 154 CG11421-PB 1..154 72..225 841 100 Plus
Obp83a-PA 154 CG11421-PA 1..154 72..225 841 100 Plus
Obp83b-PA 141 CG11422-PA 9..140 97..224 524 70.5 Plus

IP01753.pep Sequence

Translation from 155 to 679

> IP01753.pep
MDQEGPRSSGKERNGKSHIKMALNGFGRRVSASVLLIALSLLSGALILPP
AAAQRDENYPPPGILKMAKPFHDACVEKTGVTEAAIKEFSDGEIHEDEKL
KCYMNCFFHEIEVVDDNGDVHLEKLFATVPLSMRDKLMEMSKGCVHPEGD
TLCHKAWWFHQCWKKADPKHYFLP*

IP01753.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18636-PA 150 GF18636-PA 1..150 21..174 747 90.9 Plus
Dana\GF18635-PA 142 GF18635-PA 10..141 46..173 491 68.2 Plus
Dana\GF24818-PA 149 GF24818-PA 6..132 39..163 134 26.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\Os-F-PA 154 GG10688-PA 1..154 21..174 809 97.4 Plus
Dere\Os-E-PA 142 GG10677-PA 15..141 51..173 506 74.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14293-PA 157 GH14293-PA 1..157 21..174 618 73.4 Plus
Dgri\GH14291-PA 125 GH14291-PA 10..119 59..169 378 62.2 Plus
Dgri\GH15401-PA 110 GH15401-PA 1..97 71..167 133 25.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
Obp83a-PC 174 CG11421-PC 1..174 1..174 947 100 Plus
Obp83a-PB 154 CG11421-PB 1..154 21..174 841 100 Plus
Obp83a-PA 154 CG11421-PA 1..154 21..174 841 100 Plus
Obp83b-PA 141 CG11422-PA 9..140 46..173 524 70.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23188-PA 158 GI23188-PA 1..158 21..174 633 74.1 Plus
Dmoj\GI23186-PA 149 GI23186-PA 26..148 51..173 437 63.4 Plus
Dmoj\GI13005-PA 147 GI13005-PA 42..134 75..167 147 29 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23491-PA 174 GL23491-PA 30..173 30..173 716 91.7 Plus
Dper\GL23490-PA 142 GL23490-PA 10..141 46..173 531 75.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\Obp83a-PA 170 GA10995-PA 1..169 21..173 726 83.4 Plus
Dpse\Obp83b-PA 142 GA10996-PA 10..141 46..173 524 75 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10580-PA 154 GM10580-PA 1..154 21..174 823 99.4 Plus
Dsec\GM10579-PA 141 GM10579-PA 14..140 51..173 514 76.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\Pbprp3-PA 154 GD19570-PA 1..154 21..174 823 99.4 Plus
Dsim\Os-E-PA 141 GD19569-PA 14..140 51..173 514 76.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:46:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Obp83a-PA 157 GJ14502-PA 1..157 21..174 641 75.9 Plus
Dvir\Obp83abL1-PA 149 GJ14501-PA 3..148 30..173 440 56.8 Plus
Dvir\Obp69a-PA 147 GJ13150-PA 28..134 61..167 170 28 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14217-PA 165 GK14217-PA 1..165 21..174 696 78.2 Plus
Dwil\GK14216-PA 167 GK14216-PA 8..140 39..173 547 74.8 Plus
Dwil\GK14215-PA 200 GK14215-PA 50..199 23..173 431 52.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24126-PA 154 GE24126-PA 1..154 21..174 823 99.4 Plus
Dyak\GE24124-PA 142 GE24124-PA 10..141 46..173 514 73.5 Plus