Clone MIP05874 Report

Search the DGRC for MIP05874

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:58
Well:74
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG43050-RA
Protein status:MIP05874.pep: gold
Sequenced Size:1149

Clone Sequence Records

MIP05874.complete Sequence

1149 bp assembled on 2009-02-21

GenBank Submission: BT066310.1

> MIP05874.complete
CGGAGTGTAATTGCGAGTGTCCGTGCCCCGTTTCCGATTCCGCTGCACGT
TTCCGTGATGGAATATGTATACACCTGCGAAAAGAAGCGAAAACAATCAT
ATCGTTGAGGCGTCATTCGTTGTGCAATTCCCCCGCCCATCGTAATGCTC
AACAAAAGTCAAATAAATGCAGTAAATACAAGCCAAAAAACACATTGGTC
GAATGCCACACGTGAGATTTGGCTACAATGGAAAGCCAGGAGCACCAAGA
ACGGGTATGATAACCGCACTTGAGGTAAAGAAATGCCTCAATATAACAAT
CCTAAAAAATTTGAATAAAAAAAAGTTATTGGGTGTTTGGTTTGCATACG
CAACAACACCTGTCAATATACCCGCCTACAAACGTCGTTGTTCATCGTAT
AATGTTCAGGATAGTACCTTTTTCGATACCCATATCGTGTATACGGACTA
CAAGCACGTGACTGTCACCTATGACTGCAAGTACAACGATATGACCATGC
TGCATGACCTTAAAGTCCGCGTTTTAACACGCACTCGAACCCCTGTGCTC
AAAGATTTAAACCAGGCCTTATACTTTCTAGAGGAACATGCATTTTCAAT
CAAAAACTTGGATTTCCTCAAGTCAAAAGCATTCTGCTTTGAGTGGTACG
TGTTGAAATACCACTCCAAAACACGACCGGGTCGATTCAATGCGCCCATC
ATCCGGGTTTGGGATCATTGACGATGTGGCCGTTGATGACAGCATGAATT
AATTGCATAACTATTGCTAATTATTACAACATAATCAATGAAGGAGCTGC
AGCCGTGGAGAGGAAATCGTATAACTTAATTAGCCTGGACTGGCCCAACC
AAAATCAATTACCAACGACAGTCTCACTTGACTGATTGGGCCCGGGTCCT
TCAAGGGAACCAATTGTGCTGATTTCAGTGTCCTTGCTCCGAAAACTCAC
ACACAAATTTATATAAAAAGATATACATGTACATATATTGACACGAAAAG
AAATCTAGATATCCTACACCATTGATTTCGTTTCCATTAATGTAAAAGTA
TTTAGCAAACATGTTGATAGACTTAAAAAACACCTTTCCTAAAATATATT
ATACATCTAATACATCAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP05874.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:24:51
Subject Length Description Subject Range Query Range Score Percent Strand
DMG8-chr2L.24.001.a 1116 DMG8-chr2L.24.001.a 1..1116 1..1116 5565 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2014-11-26 21:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13118866..13119475 510..1119 3005 99.5 Plus
chr2L 23010047 chr2L 13118005..13118241 4..240 1140 98.7 Plus
chr2L 23010047 chr2L 13118704..13118800 417..513 470 99 Plus
chr2L 23010047 chr2L 13118551..13118643 324..416 465 100 Plus
chr2L 23010047 chr2L 13118404..13118491 238..325 440 100 Plus
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-RA 519 CG43050-PA 1..519 203..721 2595 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:05:43 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-RA 1119 CG43050-RA 1..1119 1..1119 5580 99.9 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 21:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-PA 172 CG43050-PA 1..172 203..718 828 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13120158..13120773 510..1125 3065 99.8 Plus
2L 23513712 2L 13119294..13119533 1..240 1200 100 Plus
2L 23513712 2L 13119996..13120092 417..513 470 99 Plus
2L 23513712 2L 13119843..13119935 324..416 465 100 Plus
2L 23513712 2L 13119696..13119783 238..325 440 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13120158..13120773 510..1125 3065 99.8 Plus
2L 23513712 2L 13119294..13119533 1..240 1200 100 Plus
2L 23513712 2L 13119996..13120092 417..513 470 98.9 Plus
2L 23513712 2L 13119843..13119935 324..416 465 100 Plus
2L 23513712 2L 13119696..13119783 238..325 440 100 Plus
Blast to na_te.dros performed 2014-11-26 21:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 1713..1799 1033..1118 125 64.8 Plus
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 474..505 988..957 115 84.4 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 5506..5597 948..1041 114 61.1 Plus

MIP05874.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2014-11-26 22:31:33 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13118866..13119475 510..1119 99   Plus
chr2L 13118704..13118796 417..509 100 -> Plus
chr2L 13118553..13118643 326..416 100 -> Plus
chr2L 13118406..13118491 240..325 100 -> Plus
chr2L 13118002..13118240 1..239 98 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:37:24 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 1..519 203..721 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:24:19 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 1..519 203..721 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:33 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 1..519 203..721 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:37:23 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 1..1119 1..1119 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:24:19 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 1..1119 1..1119 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:33 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
CG43050-RA 1..1119 1..1119 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:31:33 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13120158..13120767 510..1119 99   Plus
2L 13119996..13120088 417..509 100 -> Plus
2L 13119845..13119935 326..416 100 -> Plus
2L 13119698..13119783 240..325 100 -> Plus
2L 13119294..13119532 1..239 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:24:19 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13120158..13120767 510..1119 99   Plus
arm_2L 13119996..13120088 417..509 100 -> Plus
arm_2L 13119845..13119935 326..416 100 -> Plus
arm_2L 13119698..13119783 240..325 100 -> Plus
arm_2L 13119294..13119532 1..239 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:11:09 Download gff for MIP05874.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13120158..13120767 510..1119 99   Plus
2L 13119996..13120088 417..509 100 -> Plus
2L 13119845..13119935 326..416 100 -> Plus
2L 13119698..13119783 240..325 100 -> Plus
2L 13119294..13119532 1..239 100 -> Plus

MIP05874.pep Sequence

Translation from 202 to 720

> MIP05874.pep
MPHVRFGYNGKPGAPRTGMITALEVKKCLNITILKNLNKKKLLGVWFAYA
TTPVNIPAYKRRCSSYNVQDSTFFDTHIVYTDYKHVTVTYDCKYNDMTML
HDLKVRVLTRTRTPVLKDLNQALYFLEEHAFSIKNLDFLKSKAFCFEWYV
LKYHSKTRPGRFNAPIIRVWDH*

MIP05874.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2014-11-26 16:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23810-PA 147 GG23810-PA 22..112 13..103 380 74.7 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 16:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-PA 172 CG43050-PA 1..172 1..172 936 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2014-11-26 16:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18093-PA 198 GI18093-PA 78..189 23..165 228 35 Plus
Blast to dper-all-translation-r1.3.fasta performed 2014-11-26 16:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24736-PA 176 GL24736-PA 8..176 5..172 246 32.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2014-11-26 16:37:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28955-PA 230 GA28955-PA 80..230 25..172 245 34.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2014-11-26 16:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10124-PA 142 GM10124-PA 78..107 73..102 137 80 Plus

MIP05874.hyp Sequence

Translation from 202 to 720

> MIP05874.hyp
MPHVRFGYNGKPGAPRTGMITALEVKKCLNITILKNLNKKKLLGVWFAYA
TTPVNIPAYKRRCSSYNVQDSTFFDTHIVYTDYKHVTVTYDCKYNDMTML
HDLKVRVLTRTRTPVLKDLNQALYFLEEHAFSIKNLDFLKSKAFCFEWYV
LKYHSKTRPGRFNAPIIRVWDH*

MIP05874.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG43050-PA 172 CG43050-PA 1..172 1..172 936 100 Plus