Clone RE01794 Report

Search the DGRC for RE01794

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:17
Well:94
Vector:pFlc-1
Associated Gene/Transcriptmtd-RC
Protein status:RE01794.pep: gold
Sequenced Size:2316

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
l(3)82Fd-RC 2010-03-03 Manual selection by Ken Wan

Clone Sequence Records

RE01794.complete Sequence

2316 bp assembled on 2010-09-29

GenBank Submission: BT125678.1

> RE01794.complete
AGTCGGTCGAGCAACTTGTTTGAAAACACACAGAGCTGCCCCCAAAAGGA
GCTTTTTAAGTGAAAGAAAAGACGTTAAATATAGAAAAAACATCTGCGGA
GAGCACGTTGAAAAGTAAACAAATTTGAATGTTCTAACTAGGAACAAAGT
GTTTACGTGTAACGAAGAAAGGCCAAAAACAGTGCTGCAACGGCGAAGAG
CGGAAGGCGTAGAGCGTGATAAAAGCGGTGGCAACAACAGAAACGCAAAT
AATCGGAGAAAAAAGCTGAAGCAAGTCTCGTGGGTCACAAGACCATTCAG
AAAAGCGAAAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGGCGATATGTGGAGCGTTAGAGCTTTCAAACAGTGCTAGC
CCAAAAAGTGGGACACCCCCACGCACGAAAGCTTTTGCATCTGCTACCTC
TGCCCGCTTCCACTGCTGAACACCGCCACTGTTGGCCATCAGCAACATGT
GGTTCGCCATTTCTCTGTTTGCCATCTTGGCCGTTTGCGGGTTGGCCGGC
CGCAGGTGGGGTCGCTACCTCTATCTGCACTACGGCCGCCACCTGCTGCC
GCGCTCCCTCCTCTCGGCCAAGAACCGCGCGCCCACGCCCCCTCTCTCGC
CCACCAAGGACGACCAGAGCCTGGAGGCTCTCCTCGACGAGAGCGGCGAA
ATGCACGAAACGGTGCTGTCAATGAGCACAGATGAATATCGCAAGACCTC
GCTCTTTGCCACCGGTTCCTTCGACCTGGACTTCCCCATACCAGACCTGA
TCGGCAAGACAGAAATCCTTACAGAGGAGCATCGCGAGAAGCTCTGTTCA
CATCTGCCGGCTAGAGCCGAGGGATACTCCTGGTCCCTGATCTTCAGCAC
CTCACAACATGGTTTCGCACTGAACTCCCTGTACCGCAAAATGGCGCGTC
TGGAGAGTCCAGTTCTGATTGTCATTGAGGATACGGAGCACAACGTATTT
GGTGCCCTCACCTCCTGCTCACTGCATGTGTCGGATCACTTTTACGGCAC
CGGTGAGTCCCTGCTCTACAAGTTTAACCCCAGCTTCAAGGTGTTCCATT
GGACTGGCGAGAATATGTACTTCATCAAAGGAAACATGGAGAGCCTTTCG
ATTGGCGCTGGAGACGGTCGTTTTGGCCTGTGGCTGGATGGTGATCTGAA
CCAGGGACGATCGCAACAGTGCAGCACATACGGCAATGAGCCTCTGGCGC
CACAAGAAGACTTTGTTATCAAAACACTCGAATGCTGGGCATTTGTTTAA
GTGAATTTCTGTTGTCGACAACAAACATATTTAAGGATGGGAGCGAGGGC
CTCCTGCCGACCTATCTATTTAATTAACTATATGTACTTGTACTAAAAAC
CAGCAACCTGAGAAAGATGTCAAAAGCTGGTGTGCGTCCAAGGATCATCC
CTTCGGAACGGTCCACACAGCCCGAACCCCGAAACACTTGAATACACGAA
CACCACCACATGAAGATGGTTTTGAAGGGATCTGATCTGAAGAAAAATGC
TTGTGAAAACTCCGTTCTCTGAAGCAACTGCGAGTTAGCTATGCGTTGGA
ACGTATTAATTATTTAGTTTTTATATCATATATTATTAAACAAGAGCAAC
TAAATTATGTGTTAGACTTAAACAAAACAAAACAGAATATGAGAAAACCC
AAGAAACAGACTAGCGACACAAAAACTTAAGCGAAAAGAAATGAGGATAA
CATTTGAGGGCATCACACATCTCCATGAAAAACATGGCACACGCATACAC
CCACATACGCCTACATTAAAAAACACACATTATGTTTAGTTCTTAATACC
GAAAATTATAAACACCAAATTGTGAGAAGAGACATATTGAAAATAGGCAG
ATTTTTATCATTTATCGTGTCCAGTTCTCTGGATTGATTTCAGTTTGAAT
TTAGTTTCGATTGTTTGAGTTACTAGAGTTATTTGAGAACATTGTGAAAA
GCGAAGCGAGCTGAGATGAGAAAAATAAAAAGAATGTCGATATAATTTAT
AGTGCAAAAGTGCTGATTGCAAGTAAAACTAAAGCGAAGATAACTTTAAA
CGATTTGACTTTTATGTATATGTAAAGAAGGAGCCGCGAAGAGCTGAGAG
CGAGCGTTTTATTTTTAGTTTTACACGATATACATACATACATATATTTA
ATTACGATTATTTTAATGCTAATGATGTTGACTTTTATGCAATTATACTA
AAACAAAAACAGAAACAACACCAGAATGAAATACACAATATTATACAACC
AAAAAAAAAAAAAAAA

RE01794.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2014-11-27 15:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1098611..1099746 2300..1165 5680 100 Minus
chr3R 27901430 chr3R 1108326..1109040 715..1 3575 100 Minus
chr3R 27901430 chr3R 1099813..1099982 1164..995 850 100 Minus
chr3R 27901430 chr3R 1100396..1100559 997..834 820 100 Minus
chr3R 27901430 chr3R 1100630..1100752 834..712 615 100 Minus
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RC 804 CG32464-PC 1..804 497..1300 4020 100 Plus
mtd-RI 642 CG32464-PI 50..642 708..1300 2950 99.8 Plus
mtd-RAA 2616 CG32464-PAA 2028..2616 712..1300 2945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-RC 2303 CG32464-RC 4..2303 1..2300 11500 100 Plus
mtd-RI 4838 CG32464-RI 415..2007 708..2300 7950 99.9 Plus
mtd-RAA 3789 CG32464-RA 2201..3789 712..2300 7945 100 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 15:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-PC 267 CG32464-PC 1..267 497..1297 1338 100 Plus
mtd-PA 210 CG32464-PA 16..210 713..1297 1043 100 Plus
mtd-PI 213 CG32464-PI 19..213 713..1297 1043 100 Plus
mtd-PQ 192 CG32464-PQ 1..192 722..1297 1031 100 Plus
mtd-PH 192 CG32464-PH 1..192 722..1297 1031 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5272943..5274082 2304..1165 5700 100 Minus
3R 32079331 3R 5282662..5283376 715..1 3575 100 Minus
3R 32079331 3R 5274149..5274318 1164..995 850 100 Minus
3R 32079331 3R 5274732..5274895 997..834 820 100 Minus
3R 32079331 3R 5274966..5275088 834..712 615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5013774..5014913 2304..1165 5700 100 Minus
3R 31820162 3R 5023493..5024207 715..1 3575 100 Minus
3R 31820162 3R 5014980..5015149 1164..995 850 100 Minus
3R 31820162 3R 5015563..5015726 997..834 820 100 Minus
3R 31820162 3R 5015797..5015919 834..712 615 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:52:44 has no hits.

RE01794.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2014-11-27 17:39:14 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1108329..1109040 1..712 100   Minus
chr3R 1100630..1100751 713..834 100 <- Minus
chr3R 1100399..1100558 835..994 100 <- Minus
chr3R 1099813..1099982 995..1164 100 <- Minus
chr3R 1098611..1099746 1165..2300 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-09-29 15:09:17 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)82Fd-RC 1..804 497..1300 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:41:50 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)82Fd-RC 1..804 497..1300 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:17:32 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
mtd-RC 1..804 497..1300 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:39:14 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
mtd-RC 1..804 497..1300 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-29 15:09:16 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)82Fd-RC 1..2279 22..2300 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:41:50 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)82Fd-RC 1..2279 22..2300 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:17:32 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
mtd-RC 4..2303 1..2300 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:39:14 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
mtd-RC 4..2303 1..2300 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:39:14 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5282665..5283376 1..712 100   Minus
3R 5274966..5275087 713..834 100 <- Minus
3R 5274735..5274894 835..994 100 <- Minus
3R 5274149..5274318 995..1164 100 <- Minus
3R 5272947..5274082 1165..2300 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:17:32 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1108387..1109098 1..712 100   Minus
arm_3R 1100688..1100809 713..834 100 <- Minus
arm_3R 1100457..1100616 835..994 100 <- Minus
arm_3R 1099871..1100040 995..1164 100 <- Minus
arm_3R 1098669..1099804 1165..2300 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:45:18 Download gff for RE01794.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5023496..5024207 1..712 100   Minus
3R 5015797..5015918 713..834 100 <- Minus
3R 5015566..5015725 835..994 100 <- Minus
3R 5014980..5015149 995..1164 100 <- Minus
3R 5013778..5014913 1165..2300 100 <- Minus

RE01794.pep Sequence

Translation from 496 to 1299

> RE01794.pep
MWFAISLFAILAVCGLAGRRWGRYLYLHYGRHLLPRSLLSAKNRAPTPPL
SPTKDDQSLEALLDESGEMHETVLSMSTDEYRKTSLFATGSFDLDFPIPD
LIGKTEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMA
RLESPVLIVIEDTEHNVFGALTSCSLHVSDHFYGTGESLLYKFNPSFKVF
HWTGENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPL
APQEDFVIKTLECWAFV*

RE01794.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2014-11-26 14:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16064-PA 267 GF16064-PA 1..267 1..267 1391 96.6 Plus
Dana\GF24274-PA 592 GF24274-PA 423..590 116..267 221 30.6 Plus
Dana\GF14028-PA 450 GF14028-PA 234..398 107..265 168 29.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2014-11-26 14:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11111-PA 192 GG11111-PA 1..192 76..267 1032 100 Plus
Dere\GG11082-PA 94 GG11082-PA 1..93 1..97 391 81.4 Plus
Dere\GG21540-PA 592 GG21540-PA 423..590 116..267 221 30.6 Plus
Dere\GG23536-PA 447 GG23536-PA 243..398 116..265 171 30.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2014-11-26 14:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22698-PA 266 GH22698-PA 1..266 1..267 1341 92.1 Plus
Dgri\GH11143-PA 621 GH11143-PA 452..619 116..267 219 30.6 Plus
Dgri\GH13150-PA 448 GH13150-PA 243..398 116..265 183 31.6 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-PC 267 CG32464-PC 1..267 1..267 1426 100 Plus
mtd-PA 210 CG32464-PA 16..210 73..267 1043 100 Plus
mtd-PI 213 CG32464-PI 19..213 73..267 1043 100 Plus
mtd-PQ 192 CG32464-PQ 1..192 76..267 1031 100 Plus
mtd-PH 192 CG32464-PH 1..192 76..267 1031 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2014-11-26 14:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10212-PA 267 GI10212-PA 1..267 1..267 1359 93.6 Plus
Dmoj\GI17849-PA 621 GI17849-PA 452..619 116..267 219 30.6 Plus
Dmoj\GI17790-PA 449 GI17790-PA 243..398 116..265 186 31.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2014-11-26 14:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22193-PA 210 GL22193-PA 12..210 69..267 1030 96.5 Plus
Dper\GL22192-PA 118 GL22192-PA 1..73 1..73 319 89 Plus
Dper\GL19586-PA 621 GL19586-PA 452..619 116..267 219 30.6 Plus
Dper\GL19228-PA 450 GL19228-PA 253..398 127..265 177 31.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2014-11-26 14:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27407-PA 210 GA27407-PA 12..210 69..267 1030 96.5 Plus
Dpse\GA27406-PA 85 GA27406-PA 1..73 1..73 314 89 Plus
Dpse\GA26020-PA 621 GA26020-PA 452..619 116..267 219 30.6 Plus
Dpse\GA18692-PA 450 GA18692-PA 253..398 127..265 177 31.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2014-11-26 14:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10650-PA 192 GM10650-PA 1..192 76..267 1032 100 Plus
Dsec\GM10648-PA 74 GM10648-PA 1..72 1..72 381 100 Plus
Dsec\GM23295-PA 592 GM23295-PA 423..590 116..267 221 30.6 Plus
Dsec\GM23297-PA 178 GM23297-PA 4..176 96..267 194 28.7 Plus
Dsec\GM13572-PA 448 GM13572-PA 243..398 116..265 167 29.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2014-11-26 14:40:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19632-PA 267 GD19632-PA 1..267 1..267 1430 100 Plus
Dsim\GD21669-PA 350 GD21669-PA 181..348 116..267 221 30.6 Plus
Dsim\GD22498-PA 448 GD22498-PA 243..398 116..265 167 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2014-11-26 14:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11014-PA 267 GJ11014-PA 1..267 1..267 1398 95.9 Plus
Dvir\GJ17344-PA 621 GJ17344-PA 452..619 116..267 221 30.6 Plus
Dvir\GJ17615-PA 448 GJ17615-PA 243..398 116..265 180 32.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2014-11-26 14:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14285-PA 268 GK14285-PA 1..268 1..267 1350 93.7 Plus
Dwil\GK14678-PA 592 GK14678-PA 423..590 116..267 221 30.6 Plus
Dwil\GK24727-PA 450 GK24727-PA 235..399 107..265 160 29.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2014-11-26 14:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25299-PA 192 GE25299-PA 1..192 76..267 1032 100 Plus
Dyak\GE25296-PA 112 GE25296-PA 1..72 1..72 385 98.6 Plus
Dyak\GE13017-PA 592 GE13017-PA 423..590 116..267 221 30.6 Plus
Dyak\GE18362-PA 448 GE18362-PA 243..398 116..265 170 30.4 Plus

RE01794.hyp Sequence

Translation from 496 to 1299

> RE01794.hyp
MWFAISLFAILAVCGLAGRRWGRYLYLHYGRHLLPRSLLSAKNRAPTPPL
SPTKDDQSLEALLDESGEMHETVLSMSTDEYRKTSLFATGSFDLDFPIPD
LIGKTEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMA
RLESPVLIVIEDTEHNVFGALTSCSLHVSDHFYGTGESLLYKFNPSFKVF
HWTGENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPL
APQEDFVIKTLECWAFV*

RE01794.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
mtd-PC 267 CG32464-PC 1..267 1..267 1426 100 Plus
mtd-PA 210 CG32464-PA 16..210 73..267 1043 100 Plus
mtd-PI 213 CG32464-PI 19..213 73..267 1043 100 Plus
mtd-PQ 192 CG32464-PQ 1..192 76..267 1031 100 Plus
mtd-PH 192 CG32464-PH 1..192 76..267 1031 100 Plus