Clone RE35169 Report

Search the DGRC for RE35169

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:351
Well:69
Vector:pFlc-1
Associated Gene/TranscriptCG15203-RA
Protein status:RE35169.pep: gold
Preliminary Size:486
Sequenced Size:642

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15203 2002-01-01 Sim4 clustering to Release 2
CG15203 2003-01-01 Sim4 clustering to Release 3
CG15203 2008-04-29 Stopped prior to 5.5
CG15203-RA 2009-01-21 est gleaning

Clone Sequence Records

RE35169.complete Sequence

642 bp assembled on 2010-01-18

GenBank Submission: BT120143.1

> RE35169.complete
TGGGTCCAGTTTCGAACACCAAGGCGGTCGCAATGCATCCGGAACGCTAC
GCCAGTCCAAATCCATTGATACCATTGGTAATCGCAGGCGCCCTGCTCTT
CTCGATGCTCTCGCAGGTGAGCGGCTACTCGGGACGAATTCCACCGGATG
CAGATAATCCCGGGAAGTGCATGTACCGCGGTGACGTCCTGGAACTGGGT
GTCAACAATGGCATCGCTCCCTGCCAGCGACTGACTTGCAACAAGGATGG
ATCAATACTTATCGAGGGTTGCGGCAAACTGCGCATCGAAAACTGCAACC
GAGGCGAGCGAATCTCTCCGGGTGAACCCTTTCCGGAATGCTGCAAGCTG
AGATACAAGTGCAAGCAAATCGGAGCGGCACCCTACTACATCGAGCGGAA
TACGGCGGAGAAGGTCTAGTGGGATTAGCTGGGATTATGCAGGATTAGCC
ACCGGGAGAAGAGGACCACCGAAGCCAAAGATGCAATGAATCTTTCTTAG
TTGCAACGTACATATAATCAACAATTTGCTAATTTATTTGTCATCTTGTA
CTTCTCAATAAGCACCATGTTTTGTTTTTTTTTTTTTTTTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA

RE35169.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15203-RA 1138 CG15203-RA 276..864 4..592 2930 99.8 Plus
CG15203.b 1263 CG15203.b 693..1263 4..574 2840 99.8 Plus
CG15203.a 490 CG15203.a 66..490 150..574 2110 99.7 Plus
CG15203.a 490 CG15203.a 1..69 48..116 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2014-11-27 03:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10959033..10959357 268..592 1610 99.7 Plus
chrX 22417052 chrX 10957841..10957990 4..153 750 100 Plus
chrX 22417052 chrX 10958071..10958188 151..268 590 100 Plus
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 03:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15203-RB 387 CG15203-PB 1..387 33..419 1935 100 Plus
CG15203-RA 387 CG15203-PA 1..387 33..419 1935 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:51:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 03:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15203-RB 900 CG15203-RB 32..620 4..592 2930 99.8 Plus
CG15203-RA 610 CG15203-RA 24..610 4..590 2920 99.8 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 03:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG15203-PB 128 CG15203-PB 1..128 33..416 697 100 Plus
CG15203-PA 128 CG15203-PA 1..128 33..416 697 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 03:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11067775..11068099 268..592 1610 99.7 Plus
X 23542271 X 11066583..11066732 4..153 750 100 Plus
X 23542271 X 11066813..11066930 151..268 590 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 11075873..11076197 268..592 1610 99.6 Plus
X 23527363 X 11074681..11074830 4..153 750 100 Plus
X 23527363 X 11074911..11075028 151..268 590 100 Plus
3R 31820162 3R 30075762..30075819 580..637 200 89.6 Plus
3R 31820162 3R 30075762..30075819 579..636 185 87.9 Plus
Blast to na_te.dros performed on 2014-11-27 03:52:05 has no hits.

RE35169.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2014-11-27 06:02:34 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10959034..10959355 269..590 99   Plus
chrX 10958074..10958188 154..268 100 -> Plus
chrX 10957838..10957990 1..153 98 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-18 09:50:45 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
CG15203-RA 1..387 33..419 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:52:57 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
CG15203-RA 1..387 33..419 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:38 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
CG15203-RA 1..387 33..419 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:02:34 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
CG15203-RA 1..387 33..419 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-18 09:50:44 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
CG15203-RA 1..574 1..574 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:52:57 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
CG15203-RA 1..574 1..574 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:38 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
CG15203-RA 21..610 1..590 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:02:34 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
CG15203-RB 29..618 1..590 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 06:02:34 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
X 11067776..11068097 269..590 99   Plus
X 11066816..11066930 154..268 100 -> Plus
X 11066580..11066732 1..153 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:38 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10961809..10962130 269..590 99   Plus
arm_X 10960849..10960963 154..268 100 -> Plus
arm_X 10960613..10960765 1..153 98 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:29:12 Download gff for RE35169.complete
Subject Subject Range Query Range Percent Splice Strand
X 11075874..11076195 269..590 99   Plus
X 11074914..11075028 154..268 100 -> Plus
X 11074678..11074830 1..153 98 -> Plus

RE35169.pep Sequence

Translation from 2 to 418

> RE35169.pep
GPVSNTKAVAMHPERYASPNPLIPLVIAGALLFSMLSQVSGYSGRIPPDA
DNPGKCMYRGDVLELGVNNGIAPCQRLTCNKDGSILIEGCGKLRIENCNR
GERISPGEPFPECCKLRYKCKQIGAAPYYIERNTAEKV*

RE35169.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2014-11-28 12:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20288-PA 131 GF20288-PA 1..123 11..135 415 65.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2014-11-28 12:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18385-PA 128 GG18385-PA 1..128 11..138 640 94.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2014-11-28 12:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17918-PA 133 GH17918-PA 32..130 37..135 341 60.6 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15203-PB 128 CG15203-PB 1..128 11..138 697 100 Plus
CG15203-PA 128 CG15203-PA 1..128 11..138 697 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2014-11-28 12:54:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16061-PA 139 GI16061-PA 6..137 5..136 375 58.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2014-11-28 12:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18254-PA 123 GL18254-PA 1..121 11..136 474 74.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2014-11-28 12:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13567-PA 123 GA13567-PA 1..121 11..136 474 74.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2014-11-28 12:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11451-PA 128 GM11451-PA 1..128 11..138 650 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2014-11-28 12:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16999-PA 128 GD16999-PA 1..128 11..138 654 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2014-11-28 12:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15633-PA 134 GJ15633-PA 1..132 11..136 407 62.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2014-11-28 12:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19983-PA 213 GK19983-PA 1..123 11..135 432 68.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2014-11-28 12:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15902-PA 128 GE15902-PA 1..128 11..138 647 96.9 Plus

RE35169.hyp Sequence

Translation from 2 to 418

> RE35169.hyp
SPVSNTKAVAMHPERYASPNPLIPLVIAGALLFSMLSQVSGYSGRIPPDA
DNPGKCMYRGDVLELGVNNGIAPCQRLTCNKDGSILIEGCGKLRIENCNR
GERISPGEPFPECCKLRYKCKQIGAAPYYIERNTAEKV*

RE35169.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG15203-PB 128 CG15203-PB 1..128 11..138 697 100 Plus
CG15203-PA 128 CG15203-PA 1..128 11..138 697 100 Plus