Clone RE57382 Report

Search the DGRC for RE57382

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:573
Well:82
Vector:pFlc-1
Associated Gene/TranscriptRbp1-RA
Protein status:RE57382.pep: gold
Sequenced Size:771

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Rbp1-RA 2010-01-15 Manual selection by Sue Celniker

Clone Sequence Records

RE57382.complete Sequence

771 bp assembled on 2010-02-11

GenBank Submission: BT120323.1

> RE57382.complete
ACTTTTCGGTAATTGTAATAAATAAAGGAAAGGCGGAGATTTTTGTTAAA
ATTTTAACAAAATTGGATGACATTTTAGAAGCCGCTTGCTCACCTCCCGC
AATACTCACGATACCGCACCGCCCGACAAAAATGCCGCGATATAGGGAGT
GGGACTTGGCCTGCAAGGTGTACGTGGGAAACCTGGGCTCCTCGGCGTCC
AAGCACGAGATAGAAGGCGCATTTGCCAAATATGGACCCCTGCGAAACGT
GTGGGTGGCCCGCAATCCACCAGGTTTCGCCTTTGTCGAATTTGAGGATC
GCCGTGACGCGGAAGACGCAACGCGTGCCCTGGACGGAACACGCTGCTGC
GGCACTAGGATTCGCGTAGAGATGTCTTCGGGTCGCTCGCGCGATCGCCG
GCGCGGAGAAGGCGGCAGTAGTGGTCGCTCTGGTTCCGGACGCTACAGGT
CACGTTCGCCACGTCGCTCCCGATCGCCCCGCAGCCGCAGCTTCTCGCGC
GATCGTCGAAGTCGCTCGGATTCTCGGGATCGTCATTAATGTTTCCAAAA
GGATATCGTTTAAGCAGTGTCGCATCAAAGAACAAGCCGGCCAAGGCCGT
ATTTTCTGTAGGAATTCCTATGTCGATTGCGATCCAAGTAAATTTACTTC
AGATGACAATATAAATCTTTCGATGCATTCTTGAAATTCCTTTTTTTTTT
TTACTAAAAAATAAAGACGCACAATCAGCGAGTTTTGATTGGTTTCATAT
ATCACCAAAAAAAAAAAAAAA

RE57382.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:46:21
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RA 845 Rbp1-RA 48..808 1..761 3790 99.8 Plus
Rbp1-RC 762 Rbp1-RC 44..725 80..761 3395 99.8 Plus
Rbp1-RD 1600 Rbp1-RD 48..496 1..449 2245 100 Plus
Rbp1-RD 1600 Rbp1-RD 1248..1563 446..761 1565 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2014-11-27 08:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6610075..6610445 80..450 1840 99.7 Plus
chr3R 27901430 chr3R 6611675..6611981 446..754 1480 99.4 Plus
chrX 22417052 chrX 13275240..13275464 355..131 465 80.4 Minus
chr3R 27901430 chr3R 6609920..6610000 1..81 405 100 Plus
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RA 408 CG17136-PA 1..408 132..539 2040 100 Plus
Rbp1-RD 435 CG17136-PD 1..318 132..449 1590 100 Plus
Rbp1-like-RC 477 CG1987-PC 19..224 150..355 460 81.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:05:10 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-RA 773 CG17136-RA 18..771 1..754 3770 100 Plus
Rbp1-RD 1528 CG17136-RD 18..466 1..449 2245 100 Plus
Rbp1-RD 1528 CG17136-RD 1218..1526 446..754 1545 100 Plus
Rbp1-like-RC 1456 CG1987-RC 189..413 131..355 465 80.4 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 08:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-PA 135 CG17136-PA 1..81 132..374 441 100 Plus
Rbp1-PD 144 CG17136-PD 1..81 132..374 441 100 Plus
Rbp1-like-PC 158 CG1987-PC 1..81 132..374 422 95.1 Plus
Rbp1-like-PA 158 CG1987-PA 1..81 132..374 422 95.1 Plus
Rbp1-like-PB 247 CG1987-PB 1..81 132..374 422 95.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10784555..10784925 80..450 1855 100 Plus
3R 32079331 3R 10786155..10786470 446..761 1565 99.7 Plus
X 23542271 X 13384465..13384689 355..131 465 80.4 Minus
3R 32079331 3R 10784400..10784480 1..81 405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10525386..10525756 80..450 1855 100 Plus
3R 31820162 3R 10526986..10527301 446..761 1565 99.6 Plus
X 23527363 X 13392563..13392787 355..131 465 80.4 Minus
3R 31820162 3R 10525231..10525311 1..81 405 100 Plus
X 23527363 X 13389055..13389113 538..480 145 83 Minus
Blast to na_te.dros performed on 2014-11-27 08:08:22 has no hits.

RE57382.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2014-11-27 10:19:43 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6611678..6611983 449..756 99   Plus
chr3R 6610077..6610443 82..448 99 -> Plus
chr3R 6609920..6610000 1..81 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-11 18:11:46 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RC 1..408 132..539 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:26:28 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RC 1..408 132..539 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:43:38 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 1..408 132..539 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:43 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 1..408 132..539 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-11 18:11:42 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 19..774 1..756 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:26:28 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 19..774 1..756 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:43:38 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 18..773 1..756 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:43 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp1-RA 18..773 1..756 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:43 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10786158..10786465 449..756 99   Plus
3R 10784557..10784923 82..448 100 -> Plus
3R 10784400..10784480 1..81 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:43:38 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6611880..6612187 449..756 99   Plus
arm_3R 6610279..6610645 82..448 100 -> Plus
arm_3R 6610122..6610202 1..81 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:13:04 Download gff for RE57382.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10526989..10527296 449..756 99   Plus
3R 10525388..10525754 82..448 100 -> Plus
3R 10525231..10525311 1..81 100 -> Plus

RE57382.pep Sequence

Translation from 2 to 538

> RE57382.pep
FSVIVINKGKAEIFVKILTKLDDILEAACSPPAILTIPHRPTKMPRYREW
DLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDR
RDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRSGSGRYRS
RSPRRSRSPRSRSFSRDRRSRSDSRDRH*

RE57382.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2014-11-28 12:35:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17902-PA 163 GF17902-PA 1..81 44..124 440 97.5 Plus
Dana\GF19500-PA 179 GF19500-PA 1..81 44..124 430 95.1 Plus
Dana\GF14123-PA 192 GF14123-PA 6..78 53..125 222 54.8 Plus
Dana\GF16525-PA 253 GF16525-PA 7..81 54..127 156 47.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2014-11-28 12:35:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17683-PA 144 GG17683-PA 1..81 44..124 448 100 Plus
Dere\GG19507-PA 159 GG19507-PA 1..81 44..124 421 95.1 Plus
Dere\GG23961-PA 200 GG23961-PA 9..81 53..125 223 54.8 Plus
Dere\GG20059-PA 255 GG20059-PA 7..78 54..124 154 47.9 Plus
Dere\GG19772-PA 135 GG19772-PA 2..77 52..130 135 38 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2014-11-28 12:35:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24472-PA 163 GH24472-PA 1..81 44..124 421 95.1 Plus
Dgri\GH13017-PA 201 GH13017-PA 6..78 53..125 224 54.8 Plus
Dgri\GH18077-PA 252 GH18077-PA 7..81 54..127 155 47.4 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 12:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-PA 135 CG17136-PA 1..135 44..178 715 100 Plus
Rbp1-like-PC 158 CG1987-PC 1..158 44..178 591 75.5 Plus
Rbp1-like-PA 158 CG1987-PA 1..158 44..178 591 75.5 Plus
Rbp1-PD 144 CG17136-PD 1..121 44..164 580 90.9 Plus
Rbp1-like-PB 247 CG1987-PB 1..101 44..144 479 88.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2014-11-28 12:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15337-PA 151 GI15337-PA 1..81 44..124 421 95.1 Plus
Dmoj\GI23736-PA 137 GI23736-PA 1..81 44..124 418 92.6 Plus
Dmoj\GI19446-PA 196 GI19446-PA 6..78 53..125 224 54.8 Plus
Dmoj\GI24651-PA 246 GI24651-PA 7..81 54..127 155 47.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2014-11-28 12:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26725-PA 174 GL26725-PA 1..81 44..124 423 95.1 Plus
Dper\GL18979-PA 196 GL18979-PA 9..100 53..144 243 53.3 Plus
Dper\GL22249-PA 263 GL22249-PA 7..81 54..127 156 47.4 Plus
Dper\GL12592-PA 154 GL12592-PA 29..123 53..142 137 33.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2014-11-28 12:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15173-PA 161 GA15173-PA 1..81 44..124 421 95.1 Plus
Dpse\GA30013-PA 259 GA30013-PA 9..82 55..128 256 63.5 Plus
Dpse\GA19037-PA 196 GA19037-PA 9..100 53..144 243 53.3 Plus
Dpse\GA20008-PA 263 GA20008-PA 7..81 54..127 156 47.4 Plus
Dpse\GA11577-PA 154 GA11577-PA 29..123 53..142 137 33.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2014-11-28 12:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23896-PA 144 GM23896-PA 1..81 44..124 448 100 Plus
Dsec\GM13734-PA 226 GM13734-PA 9..88 55..133 257 62.5 Plus
Dsec\GM11879-PA 200 GM11879-PA 9..81 53..125 222 54.8 Plus
Dsec\GM15444-PA 255 GM15444-PA 7..78 54..124 154 47.9 Plus
Dsec\GM15280-PA 154 GM15280-PA 29..123 53..142 136 33.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2014-11-28 12:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18708-PA 144 GD18708-PA 1..81 44..124 448 100 Plus
Dsim\GD22286-PA 200 GD22286-PA 9..81 53..125 222 54.8 Plus
Dsim\GD19204-PA 154 GD19204-PA 29..123 53..142 136 33.7 Plus
Dsim\GD18917-PA 135 GD18917-PA 2..77 52..130 135 38 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2014-11-28 12:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10582-PA 140 GJ10582-PA 1..137 44..178 460 78.1 Plus
Dvir\GJ14774-PA 155 GJ14774-PA 1..81 44..124 427 96.3 Plus
Dvir\GJ17527-PA 198 GJ17527-PA 6..78 53..125 224 54.8 Plus
Dvir\GJ23504-PA 247 GJ23504-PA 7..81 54..127 155 47.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2014-11-28 12:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13897-PA 140 GK13897-PA 1..104 44..147 432 88.5 Plus
Dwil\GK16401-PA 176 GK16401-PA 1..81 44..124 428 95.1 Plus
Dwil\GK12439-PA 192 GK12439-PA 6..78 53..125 223 54.8 Plus
Dwil\GK13511-PA 263 GK13511-PA 7..78 54..124 154 47.9 Plus
Dwil\GK11244-PA 154 GK11244-PA 29..123 53..142 138 33.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2014-11-28 12:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26048-PA 135 GE26048-PA 1..135 44..178 679 100 Plus
Dyak\GE16161-PA 160 GE16161-PA 1..81 44..124 421 95.1 Plus
Dyak\GE26241-PA 200 GE26241-PA 9..81 53..125 223 54.8 Plus
Dyak\GE26323-PA 254 GE26323-PA 7..78 54..124 154 47.9 Plus
Dyak\GE26284-PA 135 GE26284-PA 2..77 52..130 135 38 Plus

RE57382.hyp Sequence

Translation from 2 to 538

> RE57382.hyp
FSVIVINKGKAEIFVKILTKLDDILEAACSPPAILTIPHRPTKMPRYREW
DLACKVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDR
RDAEDATRALDGTRCCGTRIRVEMSSGRSRDRRRGEGGSSGRSGSGRYRS
RSPRRSRSPRSRSFSRDRRSRSDSRDRH*

RE57382.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp1-PA 135 CG17136-PA 1..135 44..178 715 100 Plus
Rbp1-like-PC 158 CG1987-PC 1..158 44..178 591 75.5 Plus
Rbp1-like-PA 158 CG1987-PA 1..158 44..178 591 75.5 Plus
Rbp1-PD 144 CG17136-PD 1..121 44..164 580 90.9 Plus
Rbp1-like-PB 247 CG1987-PB 1..101 44..144 479 88.1 Plus