Clone RE70879 Report

Search the DGRC for RE70879

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:708
Well:79
Vector:pFlc-1
Associated Gene/TranscriptCG32548-RB
Protein status:RE70879.pep: gold
Sequenced Size:1491

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32548-RB 2009-06-22 Replacement based on scoring

Clone Sequence Records

RE70879.complete Sequence

1491 bp assembled on 2010-01-25

GenBank Submission: BT120204.1

> RE70879.complete
GCTGTCAACCATCGACGTTCGCGAGTCGCGTCCGCTTAGCTGATAACGAT
CCATAGTCCGATTGCACGGTTGCTCGGACATACTGCCAAATCAACGGGAG
GCGAAGTCGAGTTCCAATACCAGGCCATCCAGCCATCCAGCCATCAACCA
TCCATTAGCCTCACCACGTAAATCATGTTCGCATTGGCCTTGACGGTGGC
GGCCTTGGTGCTTGCCGGCCAGCAGGAGGTGTGCCGCGCACAGGTCTCCA
TCCACACGGACGCCAACTCGAACTCCTACAGCCTGAAGACGCCCGGAGTG
CAGCAGACCTTCACCCGGTACTACGGAGGAGCGGCCAAGAACCAGCAGGT
GGAGCAGCCGCAGCTGCAGCAGCCGCAGGAGCAGGAGCAGTTGCAAACTC
CCACGCAATTTGGTGGATTCTCGCCGTCGGGACAGCAGTATCCTGCCGTG
TACTCGCAGCCAGGATTCCGGGCCGATGGTAAGCTGAAGGTCACGCCCAA
CTCGCTGCTCCAGCAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAAC
AGCAGCAACAGCAGCAACAGCAGCAACAGCAGCTCCTGGCGCAGCAGCAG
CAGCAACTCCTGGCCGCCACATCGCCGCAGGTAGCAGCTGCATCCGGACC
AGGAGTGGGCGTTAGCGGTGGCGTGGTCAACATGCCCAGCTATGCGGACC
AGATGCACGCCGCCTTCCTCGATTATCAGCGCCAACGAGCCGAGTTCGAG
CAGCAGCAGCAGCACCTGCTGCAGAAGCTCTACCACTACTATCCCGATGT
ATCCGGCGGCCTAACATCACCGGCTCATCAGATTCAACCCCAAACCCCCC
AGATAGCTGCTCCCGCCGATGTGGGAGGCGCTCCGGCGGGCGTGGCAGCA
CAGAACGCAGCTGGCCGCTTCGCCTACCGTCGGCCGCAGTTCAGCAACAA
TGGCCTGCAGCCCGAGCGCCTTGCATCCGGATCCATTGTGCCCGGAGGTC
CAGTAAGAGGAGGTCCAGTTGGAGTCATCCCGGGAGGAGTGATCGGATCA
GCGCCTTTGCGCTCCAACAGTCTGGGAGGGGGAGCAAGTGGAGACTTCTA
CTCCACGCAACAGCACATGGGCTTCATGCAGCAGCAGCAGCAGGACGTGC
TCCGTGACCAGCAGCAGTCGGTGGCCCATCAGTTCGCCACCAGCCAGTTG
GCGCCCACCACCCGCCAGAGCTATGGGATGGCCGTTCCCATGTCCTCCGT
GCTGGGATCCCCCACCTACCAGCAATCGCCGGACGTCTCTCATGTGAGCT
TCTCAAGCGGCAATCTCAACTACAGCTTCTAATGATGATGAGCTGTTATT
CCAAGGACTTCCAAAACTAGTATTTTCATTTTTTTTTCACACACCTTTTT
TTTTGCGTAAATTTTCGTGGTATTTGATAAGAGGAATTGTTTAGGGCAAG
CAAGAATAAATTTTGTAAGTGATGACAAAAAAAAAAAAAAA

RE70879.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:35:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RB 1684 CG32548-RB 165..1636 4..1475 7345 99.9 Plus
CG32548-RC 1509 CG32548-RC 422..1503 394..1475 5410 100 Plus
Blast to d_melanogaster_OreR.fa performed 2014-11-27 08:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 18324887..18325970 1475..393 5370 99.9 Minus
chrX 22417052 chrX 18329356..18329745 393..4 1935 99.7 Minus
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RB 1158 CG32548-PB 1..1158 175..1332 5790 100 Plus
CG32548-RC 1065 CG32548-PC 127..1065 394..1332 4695 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:14:30 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-RB 1475 CG32548-RB 3..1474 4..1475 7345 99.9 Plus
CG32548-RC 1382 CG32548-RC 300..1381 394..1475 5410 100 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 08:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PB 385 CG32548-PB 15..385 217..1329 853 100 Plus
CG32548-PC 354 CG32548-PC 48..354 409..1329 654 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18435720..18436802 1475..393 5415 100 Minus
X 23542271 X 18440190..18440579 393..4 1935 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18443818..18444900 1475..393 5415 100 Minus
X 23527363 X 18448288..18448677 393..4 1935 99.7 Minus
Blast to na_te.dros performed on 2014-11-27 08:10:15 has no hits.

RE70879.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2014-11-27 09:57:12 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18329407..18329747 1..342 99   Minus
chrX 18325853..18325970 393..510 100 == Minus
chrX 18324886..18325757 606..1476 99 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-25 16:11:38 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 1..1158 175..1332 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:54:17 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 1..1158 175..1332 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:35:21 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 1..1158 175..1332 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:57:12 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 1..1158 175..1332 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-25 16:11:37 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 1..1474 2..1476 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:54:17 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 1..1474 2..1476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:35:21 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 1..1474 2..1476 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:57:12 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
CG32548-RB 1..1474 2..1476 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:57:12 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
X 18440190..18440581 1..393 99   Minus
X 18435719..18436801 394..1476 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:35:21 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18334223..18334614 1..393 99   Minus
arm_X 18329752..18330834 394..1476 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:30:42 Download gff for RE70879.complete
Subject Subject Range Query Range Percent Splice Strand
X 18448288..18448679 1..393 99   Minus
X 18443817..18444899 394..1476 99 <- Minus

RE70879.pep Sequence

Translation from 174 to 1331

> RE70879.pep
MFALALTVAALVLAGQQEVCRAQVSIHTDANSNSYSLKTPGVQQTFTRYY
GGAAKNQQVEQPQLQQPQEQEQLQTPTQFGGFSPSGQQYPAVYSQPGFRA
DGKLKVTPNSLLQQQQQQQQQQQQQQQQQQQQQQQQLLAQQQQQLLAATS
PQVAAASGPGVGVSGGVVNMPSYADQMHAAFLDYQRQRAEFEQQQQHLLQ
KLYHYYPDVSGGLTSPAHQIQPQTPQIAAPADVGGAPAGVAAQNAAGRFA
YRRPQFSNNGLQPERLASGSIVPGGPVRGGPVGVIPGGVIGSAPLRSNSL
GGGASGDFYSTQQHMGFMQQQQQDVLRDQQQSVAHQFATSQLAPTTRQSY
GMAVPMSSVLGSPTYQQSPDVSHVSFSSGNLNYSF*

RE70879.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2014-11-28 08:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22507-PA 382 GF22507-PA 146..382 161..385 556 60.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2014-11-28 08:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18125-PA 332 GG18125-PA 48..332 79..385 920 73 Plus
Dere\GG18124-PA 81 GG18124-PA 1..55 1..55 208 90.9 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PB 385 CG32548-PB 1..385 1..385 1979 100 Plus
CG32548-PC 354 CG32548-PC 43..354 74..385 1612 100 Plus
Atx2-PA 888 CG5166-PA 471..797 27..315 201 28.6 Plus
Atx2-PD 1023 CG5166-PD 471..797 27..315 201 28.6 Plus
Atx2-PC 1023 CG5166-PC 471..797 27..315 201 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2014-11-28 08:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15593-PA 368 GI15593-PA 286..368 303..385 263 66.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2014-11-28 08:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27035-PA 373 GL27035-PA 1..373 1..385 682 53.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2014-11-28 08:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22322-PA 364 GA22322-PA 1..364 1..385 679 52.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2014-11-28 08:30:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22817-PA 341 GM22817-PA 43..341 74..385 982 88.1 Plus
Dsec\GM22816-PA 84 GM22816-PA 1..56 1..56 276 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2014-11-28 08:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15637-PA 343 GD15637-PA 43..343 74..385 942 87.6 Plus
Dsim\GD15636-PA 83 GD15636-PA 1..56 1..56 219 94.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2014-11-28 08:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15199-PA 362 GJ15199-PA 280..362 303..385 327 78.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2014-11-28 08:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25663-PA 332 GK25663-PA 255..332 308..385 348 87.2 Plus
Dwil\GK25663-PA 332 GK25663-PA 154..201 168..215 191 87.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2014-11-28 08:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15530-PA 337 GE15530-PA 43..337 74..385 870 73 Plus
Dyak\GE15529-PA 79 GE15529-PA 1..56 1..56 221 91.1 Plus

RE70879.hyp Sequence

Translation from 174 to 1331

> RE70879.hyp
MFALALTVAALVLAGQQEVCRAQVSIHTDANSNSYSLKTPGVQQTFTRYY
GGAAKNQQVEQPQLQQPQEQEQLQTPTQFGGFSPSGQQYPAVYSQPGFRA
DGKLKVTPNSLLQQQQQQQQQQQQQQQQQQQQQQQQLLAQQQQQLLAATS
PQVAAASGPGVGVSGGVVNMPSYADQMHAAFLDYQRQRAEFEQQQQHLLQ
KLYHYYPDVSGGLTSPAHQIQPQTPQIAAPADVGGAPAGVAAQNAAGRFA
YRRPQFSNNGLQPERLASGSIVPGGPVRGGPVGVIPGGVIGSAPLRSNSL
GGGASGDFYSTQQHMGFMQQQQQDVLRDQQQSVAHQFATSQLAPTTRQSY
GMAVPMSSVLGSPTYQQSPDVSHVSFSSGNLNYSF*

RE70879.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32548-PB 385 CG32548-PB 1..385 1..385 1979 100 Plus
CG32548-PC 354 CG32548-PC 43..354 74..385 1612 100 Plus
Atx2-PA 888 CG5166-PA 471..797 27..315 201 28.6 Plus
Atx2-PD 1023 CG5166-PD 471..797 27..315 201 28.6 Plus
Atx2-PC 1023 CG5166-PC 471..797 27..315 201 28.6 Plus