Clone RE72667 Report

Search the DGRC for RE72667

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:726
Well:67
Vector:pFlc-1
Associated Gene/TranscriptCG14454-RA
Protein status:RE72667.pep: gold
Sequenced Size:451

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32453 2003-01-01 Sim4 clustering to Release 3
CG32453 2008-04-29 Release 5.5 accounting
CG32453 2008-08-15 Release 5.9 accounting
CG32453 2008-12-18 5.12 accounting

Clone Sequence Records

RE72667.complete Sequence

451 bp (451 high quality bases) assembled on 2004-01-31

GenBank Submission: BT011528

> RE72667.complete
ACAACAAAATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGCTCCTGTGT
CTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCCTCGACGGC
GACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTCATCCGCCA
CCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCACTGCCTCC
TCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCTCGCCGTCG
TCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACAGCGCCAGG
AAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGCGTCGCCTG
ATCAATCAACTTCAGGGATAGATAGGGCTGATTACCAATGTTACTAGCAA
TATAAAAATAAAGCCATAAGTGCTAATTAATGTGCAAAAAAAAAAAAAAA
A

RE72667.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32453-RA 434 CG32453-RA 1..434 1..434 2170 100 Plus
CG14454-RA 856 CG14454-RA 1..370 1..370 1835 99.7 Plus
CG14452-RA 485 CG14452-RA 73..276 63..266 685 90.3 Plus
Blast to d_melanogaster_OreR.fa performed 2014-11-26 21:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22686143..22686577 1..435 2175 100 Plus
chr3L 24539361 chr3L 22681055..22681424 370..1 1835 99.7 Minus
chr3L 24539361 chr3L 22682436..22682639 266..63 665 90.3 Minus
chr3L 24539361 chr3L 22684928..22685131 63..266 665 90.3 Plus
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:26:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG32453-RB 363 CG32453-PB 1..363 9..371 1815 100 Plus
CG32453-RA 363 CG32453-PA 1..363 9..371 1815 100 Plus
CG14454-RB 363 CG14454-PB 1..362 9..370 1795 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:15:38 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32453-RB 741 CG32453-RB 10..444 1..435 2175 100 Plus
CG32453-RA 444 CG32453-RA 10..444 1..435 2175 100 Plus
CG14454-RB 445 CG14454-RB 9..378 1..370 1835 99.7 Plus
Blast to dmel-all-translation-r6.02.fasta performed on 2014-11-26 21:26:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22697239..22697673 1..435 2175 100 Plus
3L 28110227 3L 22692151..22692520 370..1 1835 99.7 Minus
3L 28110227 3L 22693532..22693735 266..63 665 90.3 Minus
3L 28110227 3L 22696024..22696227 63..266 665 90.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22690339..22690773 1..435 2175 100 Plus
3L 28103327 3L 22685251..22685620 370..1 1835 99.7 Minus
3L 28103327 3L 22689124..22689327 63..266 685 90.3 Plus
3L 28103327 3L 22686632..22686835 266..63 685 90.3 Minus
Blast to na_te.dros performed on 2014-11-26 21:26:26 has no hits.

RE72667.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2014-11-26 22:32:23 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22686343..22686577 201..435 100   Plus
chr3L 22686143..22686243 1..101 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:36:11 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 1..363 9..371 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:40:34 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 1..363 9..371 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:05:14 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 1..363 9..371 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:29:25 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 1..363 9..371 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:32:23 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 1..363 9..371 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:49:35 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 1..434 1..434 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:40:34 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 1..434 1..434 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:05:14 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 10..444 1..435 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:29:25 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 1..434 1..434 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:32:23 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
CG32453-RA 10..444 1..435 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:32:23 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22697239..22697673 1..435 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:05:14 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22690339..22690773 1..435 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:01:49 Download gff for RE72667.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22690339..22690773 1..435 100   Plus

RE72667.hyp Sequence

Translation from 2 to 370

> RE72667.hyp
NKMRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSAT
TTTTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQE
KRRRRMEQLLVRQRRLINQLQG*

RE72667.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32453-PB 120 CG32453-PB 1..120 3..122 559 100 Plus
CG32453-PA 120 CG32453-PA 1..120 3..122 559 100 Plus
CG14454-PB 120 CG14454-PB 1..120 3..122 559 100 Plus
CG14454-PA 120 CG14454-PA 1..120 3..122 559 100 Plus
CG14452-PA 117 CG14452-PA 1..117 3..122 408 74.2 Plus

RE72667.pep Sequence

Translation from 2 to 370

> RE72667.pep
NKMRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSAT
TTTTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQE
KRRRRMEQLLVRQRRLINQLQG*

RE72667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 14:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32453-PB 120 CG32453-PB 1..120 3..122 559 100 Plus
CG32453-PA 120 CG32453-PA 1..120 3..122 559 100 Plus
CG14454-PB 120 CG14454-PB 1..120 3..122 559 100 Plus
CG14454-PA 120 CG14454-PA 1..120 3..122 559 100 Plus
CG14452-PA 117 CG14452-PA 1..117 3..122 408 74.2 Plus