Clone RH53709 Report

Search the DGRC for RH53709

Clone and Library Details

Library:RH
Tissue Source:Drosophila melanogaster adult head
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2001-04-30
Comments:Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:537
Well:9
Vector:pFlc-1
Associated Gene/Transcriptmtt-RC
Protein status:RH53709.pep: gold
Sequenced Size:3948

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
mXr 2008-04-29 Picked prior to 5.5
mXr 2008-08-15 Release 5.9 accounting
mXr 2008-12-18 5.12 accounting

Clone Sequence Records

RH53709.complete Sequence

3948 bp assembled on 2008-06-18

GenBank Submission: BT033068

> RH53709.complete
CATTAAATTCTTTCTTCCTCCTTTCGCATCCTTTTAATACGCCGCTGCCC
AGGGGCCATTATCTTCGGTTCGGATCAAGAGGTGCGCCAAGTGATGCGGG
CGGTGCGCCGGGCGAATGCAACTGGTTCCTTCTCCTGGATCGGATCCGAT
GGCTGGAGTGCCCGGAATTTGGTGTCCGACGACTACGAGCCGGAGGTGGA
AGGCACGCTGTCTGTGCAGCCGCAGGCGAATCCGGTGCGCGGGTTCGAGG
AGTACTTCCTCAGTCTGACGGTGGAGAACAATCAACGCAATCCCTGGTTT
GTGGAATTCTGGGAGGATCACTTTCAGTGCCGATATCCCGGCAGTACGAG
CACTCCGTACAATAACTACACCAAACAGTGCACCACAAAGGAGCGACTTT
CACGCCAGAACACTGACTTCGAGGACCAGTTGCAGTTTGTCAGCGATGCG
GTGATGGCATTTGCATACGCCCTAAGGGATATGCACCGCGACCTGTGCGG
CGGAGGTCCTTCTCTCTGCGAGGCCATGAAGCCAACGAAGGGTGCAGACT
TGCTGAAATATTTGCGAAAAGTGGAGTTTGAGGGCCTCAGCGGCGACGAG
TTCCGCTTCGACGGGAACGGCGACGGTCCCGCCCGGTACAACATCATCCA
CTTCAAGCAGTCCCAGGCGGGACAGTACCACTGGGTCAAGGTGGGCGAGT
ACACCGAGGGCGAGCTGCGGCTTAATATGACGGAGGTGAAGTTTAAGCGG
CTGAGTCCCAAGCCGCCGGAGTCTGTCTGCAGCCTGCCATGTCTTGTGGG
TCAGGCCAAGAAGTACGTGGAAGGCGAGAGCTGCTGTTGGCACTGCTTCA
ATTGCACAACCTATCAAATCCGCCACCCGGATGACGAGACCCATTGCAAG
CTGTGCAAGCTGGGCACTCTTCCCGACGCCCACAAGCAGTACTGCCGCCC
CATCCCGGAGATATATTTGCGTCCGGAGTCCGCTTGGGCCATCGGTGCTA
TGGCGTTCAGTGCGACCGGGATCTTAGTAACGCTCTTCGTAATGGGCGTA
TTTGTCAGGCACAACGACACGCCCATAGTGCGTGCCTCTGGTCGGGAGCT
GAGCTACATCCTGCTGGCGGGGATTTTCATGTGCTACGGTGTCACCTTTG
CCCTGGTCCTGAAGCCGACCAACATAGTGTGTGCCATTCAGCGGTTTGGT
GTCGGCTTCTGCTTCACGGTCGTTTATGCAGCACTGTTGACCAAAACGAA
TCGCATTGCACGGATCTTCAAAGCGGGCAAACAATCCGCCAAGAGGCCCT
CCTTCATTAGTCCCAAGTCCCAGCTGGTAATCTGTGCGTGCCTGGTTAGT
GTGCAGATACTCATCAACGGCGTTTGGATGGTAATTGCGCCATCACATGC
CATGCACCATTATCCCACACGCGAGGATAATCTGCTCGTCTGCGACTCGT
ACATCGACGCCTCCTACATGATTGCGTTCTCCTACCCAATCTTCCTGATT
GTTATTTGCACGGTCTACGCGGTGCTCACGCGAAAGATTCCGGAGGCTTT
CAACGAATCGAAGCATATTGGATTCACCATGTACACGACTTGTGTGATTT
GGCTGGCTTTTGTACCGCTCTACTTCGGAACCGCCAACCACGTTCCGCTG
CGCATCACCAGCATGTCGGTGACCATCAGCTTATCCGCCAGCGTGACCAT
CGCCTGTCTCTTTTCGCCCAAGCTGTACATAATACTCATACGCCCCGAGC
GCAACGTGCGCCAGAGTATGATGCCGCCTCGCTACGGCAACATGCACCGC
ACCGCTGGCACAGGACCCTCGTCCATGATGGCCGCCGCCGTGGTGACCGC
CGCCACCTGTGCCCAGGAGGAGAAGATCCAGAAGCATATCACTCCCACAA
ACACAGAAAACTCGCTAAAGACGAAGAAATTGTGCGAAATGGCCACTCAG
ACAATTTCCAGTATAATCACGTCGCTGGACATCAATGCGTACAATCAAAT
ACCATATGCCGATCAATATGTGCCAAACAATGCCACAACGGCCACGACCA
CGCCCACAGATAAGGGCAGTGGCAACGGCAACAGCAACAGCAATAGCAAT
ACGAATGGTAGTAGCAATAGCAACAGCAACAGCAATGGCGATGGCGATGT
GGCAACAGAGCAAGTCGTGGCCAACAATAATAAAATCAATCAGCGACAAC
ATGGCCAGCCGGCCGTGGCATTTGCCATCACATCGACTAACAATCACATA
AGCGGCCCAGCAGCAACCATAACAACAACAGCGGCAACTGGCGAAACAAC
AACTGAGGCGCTGGTGGCTACAATAACAACTCCATTGGCAACGGTGGATG
GCAGCGAAACCATGTCCGTGGCTCCCAACAATGGGCATGGAAACAACGGG
AGCCAACGTCCGCCGGTCCTGCAAACAAACTTATAGCTAAACGCGCAACA
ATTGCAGCAACAGCTGCTGAAGGAGCAGCAGCGACAACAAGCCGAGCTGC
AAACGCAACATCCGCAGCAGCAACATGGAACACAAAGCTCTTCCAGCGAC
ACCGCCAGCACGGGCAGCGGCAGTGCGGCGAAGAAGCGGGCCGCAATTCC
CGTTTAGCTGCCCCCGGAGATTCGAGATTCTCGCAACCATACGTAAGTAG
AGGAAAGTGTCTGTTGACCCAAGCGATTCCCGGCATCAGTCTAGGGATGC
GGAAAAGCAGACAAGAGGAGGGCAGGAGGTCGTGCTAGGACGGGACTAAA
TTGGGAGCAGCTGGGCCACAGAAATATCTTCAGATCTTAGAAGGCGAAAT
AATTCATTTACCACTTTTGTTCGCTTATTAATTTGAGTGAATTCTGGTTA
TACCTTACCCCCATAGACACAAATTATCTTAACGTTCTTTTATATAAGTT
TATCGATAGCTGTACAACAATGTATCTCAATAATGAAGATATTCCTGTGG
CACTTAAGGCTTTCTTCAGATTTTAACATGCACGCAAGAGTCATAAGTAA
GTAAGAGTCGGCTGATCAAAAACCTTCGCAACTCTTCCCAAAAACAAATG
TGTTTCTCCATTTTACACTTCAGCACAAGAGTTAAAAAATATATATTTAA
AATAAATTGTCAACCTTAATCTATTAATAAGTGTTTAGTACTTAAGCTTA
TCTAGAATTCTAAGCGTTGTTTCAAAGCGTTCCGAAAGAAACAAAAAAAT
GAAAATGTGATATAATTTCAAAAATGTGTTTTCTACAACCGAAGCAACTT
ACAAGCTATCTGAATAGTACACGAAACTTATAGGCTAAGTGAGGCAAACG
TTGTACAGTGAGCACTGGATAAAGAGGACTTTTCGAGGGCGCAATTATGT
TCCAAAAGGGCTGGGACACAGCCCCTTTGCAATGTAGCAGCTAGTTAGAA
CAATTACAATTGCATTTATTGTGTTGTTTGAGCCCATCAACATGGTAGAT
TTAATTGTTGTCCAACTGAGATGTGTGTACATATGTATGTATGGTATTTA
GGGGTGCATTTCTTAGTCGTAGCGACACCTCGATGTGAATTCGTATTAAA
GTTAATTGTGAGCAGCTTTCAACTCGAAATGTGCTATCTCCGAAAACACA
TAGTTAAATATTTGTTAAAGAGCGCAAGTAATGCAATACATGTCTAGCCA
AAACATGGGTACAAAAAATAGCGAAATTTGTTCGTTTTCCGTGTCTGTGT
GTTCAGTGTAAATAGTCGTTAATGAGAATTCCATGGAACATCCAAGATTT
GAATGTCTTTCAAATTAGTTACTTGATGTATAGTTAATATTACTATTATA
TAAAAAAAAAAAAAAACGCTAAATGTTTTTTGGCCGCATATGGATTTACG
AATAAAGCAAGACGAATATCAAAGAATCAAAAACACTTTCCATTTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA

RH53709.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
mtt.b 5377 mtt.b 1578..5377 51..3850 18970 99.9 Plus
mtt.a 6009 mtt.a 2210..6009 51..3850 18970 99.9 Plus
mtt.d 5292 mtt.d 1578..5292 51..3765 18545 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2014-11-26 21:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4361478..4363481 3901..1904 9835 99.5 Minus
chr2R 21145070 chr2R 4367387..4367605 1571..1353 1095 100 Minus
chr2R 21145070 chr2R 4371136..4371331 197..2 980 100 Minus
chr2R 21145070 chr2R 4368751..4368942 1059..868 945 99.5 Minus
chr2R 21145070 chr2R 4364010..4364195 1906..1721 915 99.5 Minus
chr2R 21145070 chr2R 4370390..4370563 477..304 870 100 Minus
chr2R 21145070 chr2R 4367716..4367879 1356..1193 820 100 Minus
chr2R 21145070 chr2R 4366859..4367011 1722..1570 765 100 Minus
chr2R 21145070 chr2R 4369483..4369633 733..583 755 100 Minus
chr2R 21145070 chr2R 4367958..4368097 1195..1056 700 100 Minus
chr2R 21145070 chr2R 4369179..4369313 867..733 675 100 Minus
chr2R 21145070 chr2R 4370667..4370777 304..194 555 100 Minus
chr2R 21145070 chr2R 4370140..4370253 584..471 540 98.2 Minus
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
mtt-RG 4419 CG30361-PG 1863..4419 51..2607 12770 100 Plus
mtt-RF 3747 CG30361-PF 1362..3747 51..2436 11915 100 Plus
mtt-RE 3288 CG30361-PE 903..3288 51..2436 11915 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:33:12 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
mtt-RC 3894 CG30361-RC 1..3894 2..3895 19440 99.9 Plus
mtt-RG 7328 CG30361-RG 3484..7328 51..3895 19195 99.9 Plus
mtt-RF 5422 CG30361-RF 1578..5422 51..3895 19195 99.9 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 21:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
mtt-PG 1472 CG30361-PG 622..1410 52..2418 3741 100 Plus
mtt-PF 1248 CG30361-PF 455..1243 52..2418 3741 100 Plus
mtt-PE 1095 CG30361-PE 302..1090 52..2418 3741 100 Plus
mtt-PD 1415 CG30361-PD 622..1410 52..2418 3741 100 Plus
mtt-PC 780 CG30361-PC 1..775 94..2418 3673 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8473950..8475947 3901..1904 9975 99.9 Minus
2R 25286936 2R 8479852..8480070 1571..1353 1095 100 Minus
2R 25286936 2R 8483601..8483796 197..2 980 100 Minus
2R 25286936 2R 8481216..8481407 1059..868 960 100 Minus
2R 25286936 2R 8476476..8476661 1906..1721 930 100 Minus
2R 25286936 2R 8482855..8483028 477..304 870 100 Minus
2R 25286936 2R 8480181..8480344 1356..1193 820 100 Minus
2R 25286936 2R 8479324..8479476 1722..1570 765 100 Minus
2R 25286936 2R 8481948..8482098 733..583 755 100 Minus
2R 25286936 2R 8480423..8480562 1195..1056 700 100 Minus
2R 25286936 2R 8481644..8481778 867..733 675 100 Minus
2R 25286936 2R 8483132..8483242 304..194 555 100 Minus
2R 25286936 2R 8482605..8482718 584..471 540 98.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8475149..8477146 3901..1904 9975 99.9 Minus
2R 25260384 2R 8481051..8481269 1571..1353 1095 100 Minus
2R 25260384 2R 8484800..8484995 197..2 980 100 Minus
2R 25260384 2R 8482415..8482606 1059..868 960 100 Minus
2R 25260384 2R 8477675..8477860 1906..1721 930 100 Minus
2R 25260384 2R 8484054..8484227 477..304 870 100 Minus
2R 25260384 2R 8481380..8481543 1356..1193 820 100 Minus
2R 25260384 2R 8480523..8480675 1722..1570 765 100 Minus
2R 25260384 2R 8483147..8483297 733..583 755 100 Minus
2R 25260384 2R 8481622..8481761 1195..1056 700 100 Minus
2R 25260384 2R 8482843..8482977 867..733 675 100 Minus
2R 25260384 2R 8484331..8484441 304..194 555 100 Minus
2R 25260384 2R 8483804..8483917 584..471 540 98.2 Minus
Blast to na_te.dros performed 2014-11-26 21:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2853 2067..2568 321 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2372..2901 2066..2568 288 55.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6856 2446..2573 238 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2467 2446..2572 233 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6913 2445..2573 232 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6838 2446..2573 211 66.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2511 2392..2568 203 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6868 2445..2576 201 67.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2253..2446 2378..2572 197 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6817 2474..2573 188 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6921 2390..2560 186 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6763..6891 2445..2572 183 62.3 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3240..3342 2458..2559 180 67.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2644 2258..2572 173 56.2 Plus
roo 9092 roo DM_ROO 9092bp 1055..1149 2437..2525 171 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2379..2677 2258..2536 167 56.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2430..2549 2446..2560 163 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6838..6918 2445..2525 162 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2289..2417 2442..2573 159 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..7037 2257..2562 154 56 Plus
roo 9092 roo DM_ROO 9092bp 1059..1161 2459..2560 143 61.2 Plus
roo 9092 roo DM_ROO 9092bp 1063..1137 2454..2525 133 68 Plus
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 2639..2787 3776..3931 132 59.5 Plus
TART-A 13424 TART-A 13424bp 118..147 2257..2286 132 93.3 Plus
TART-A 13424 TART-A 13424bp 11296..11325 2257..2286 132 93.3 Plus
roo 9092 roo DM_ROO 9092bp 1109..1161 2434..2489 120 71.4 Plus
accord2 7650 accord2 QBERT 7650bp 4354..4422 2185..2117 120 63.8 Minus

RH53709.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2014-11-26 22:38:05 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4371138..4371331 1..195 99   Minus
chr2R 4370667..4370775 196..304 100 <- Minus
chr2R 4370391..4370562 305..476 100 <- Minus
chr2R 4370141..4370247 477..583 99 <- Minus
chr2R 4369483..4369632 584..733 100 <- Minus
chr2R 4369179..4369312 734..867 100 <- Minus
chr2R 4368752..4368942 868..1058 99 <- Minus
chr2R 4367960..4368094 1059..1193 100 <- Minus
chr2R 4367716..4367878 1194..1356 100 <- Minus
chr2R 4367388..4367601 1357..1570 100 <- Minus
chr2R 4366859..4367010 1571..1722 100 <- Minus
chr2R 4364010..4364193 1723..1906 99 <- Minus
chr2R 4363319..4363478 1907..2066 100 <- Minus
chr2R 4362935..4363239 2140..2444 100 == Minus
chr2R 4361484..4362853 2526..3895 95 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:49:32 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mXr-RF 1350..3747 41..2436 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:04:50 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mtt-RF 1350..3747 41..2436 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:31:51 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mtt-RG 1851..4419 41..2607 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:52:05 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mXr-RF 1350..3747 41..2436 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:38:05 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mtt-RG 1851..4419 41..2607 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:27:31 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mXr-RC 6..3428 1..3423 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:04:50 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mtt-RC 6..3428 1..3423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:31:51 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mtt-RC 1..3894 2..3895 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:52:05 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mXr-RC 6..3428 1..3423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:05 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
mtt-RC 1..3894 2..3895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:05 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8483603..8483796 1..195 99   Minus
2R 8483132..8483240 196..304 100 <- Minus
2R 8482856..8483027 305..476 100 <- Minus
2R 8482606..8482712 477..583 99 <- Minus
2R 8481948..8482097 584..733 100 <- Minus
2R 8481644..8481777 734..867 100 <- Minus
2R 8481217..8481407 868..1058 100 <- Minus
2R 8480425..8480559 1059..1193 100 <- Minus
2R 8480181..8480343 1194..1356 100 <- Minus
2R 8479853..8480066 1357..1570 100 <- Minus
2R 8479324..8479475 1571..1722 100 <- Minus
2R 8476476..8476659 1723..1906 100 <- Minus
2R 8473956..8475944 1907..3895 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:31:51 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4371108..4371301 1..195 99   Minus
arm_2R 4370637..4370745 196..304 100 <- Minus
arm_2R 4370361..4370532 305..476 100 <- Minus
arm_2R 4370111..4370217 477..583 99 <- Minus
arm_2R 4369453..4369602 584..733 100 <- Minus
arm_2R 4369149..4369282 734..867 100 <- Minus
arm_2R 4368722..4368912 868..1058 100 <- Minus
arm_2R 4367930..4368064 1059..1193 100 <- Minus
arm_2R 4367686..4367848 1194..1356 100 <- Minus
arm_2R 4367358..4367571 1357..1570 100 <- Minus
arm_2R 4366829..4366980 1571..1722 100 <- Minus
arm_2R 4363981..4364164 1723..1906 100 <- Minus
arm_2R 4361461..4363449 1907..3895 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:33:19 Download gff for RH53709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8484802..8484995 1..195 99   Minus
2R 8484331..8484439 196..304 100 <- Minus
2R 8484055..8484226 305..476 100 <- Minus
2R 8483805..8483911 477..583 99 <- Minus
2R 8483147..8483296 584..733 100 <- Minus
2R 8482843..8482976 734..867 100 <- Minus
2R 8482416..8482606 868..1058 100 <- Minus
2R 8481624..8481758 1059..1193 100 <- Minus
2R 8481380..8481542 1194..1356 100 <- Minus
2R 8481052..8481265 1357..1570 100 <- Minus
2R 8480523..8480674 1571..1722 100 <- Minus
2R 8477675..8477858 1723..1906 100 <- Minus
2R 8475155..8477143 1907..3895 99 <- Minus

RH53709.pep Sequence

Translation from 93 to 2435

> RH53709.pep
MRAVRRANATGSFSWIGSDGWSARNLVSDDYEPEVEGTLSVQPQANPVRG
FEEYFLSLTVENNQRNPWFVEFWEDHFQCRYPGSTSTPYNNYTKQCTTKE
RLSRQNTDFEDQLQFVSDAVMAFAYALRDMHRDLCGGGPSLCEAMKPTKG
ADLLKYLRKVEFEGLSGDEFRFDGNGDGPARYNIIHFKQSQAGQYHWVKV
GEYTEGELRLNMTEVKFKRLSPKPPESVCSLPCLVGQAKKYVEGESCCWH
CFNCTTYQIRHPDDETHCKLCKLGTLPDAHKQYCRPIPEIYLRPESAWAI
GAMAFSATGILVTLFVMGVFVRHNDTPIVRASGRELSYILLAGIFMCYGV
TFALVLKPTNIVCAIQRFGVGFCFTVVYAALLTKTNRIARIFKAGKQSAK
RPSFISPKSQLVICACLVSVQILINGVWMVIAPSHAMHHYPTREDNLLVC
DSYIDASYMIAFSYPIFLIVICTVYAVLTRKIPEAFNESKHIGFTMYTTC
VIWLAFVPLYFGTANHVPLRITSMSVTISLSASVTIACLFSPKLYIILIR
PERNVRQSMMPPRYGNMHRTAGTGPSSMMAAAVVTAATCAQEEKIQKHIT
PTNTENSLKTKKLCEMATQTISSIITSLDINAYNQIPYADQYVPNNATTA
TTTPTDKGSGNGNSNSNSNTNGSSNSNSNSNGDGDVATEQVVANNNKINQ
RQHGQPAVAFAITSTNNHISGPAATITTTAATGETTTEALVATITTPLAT
VDGSETMSVAPNNGHGNNGSQRPPVLQTNL*

RH53709.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2014-11-27 13:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12584-PA 1293 GF12584-PA 478..1197 1..719 3542 94.9 Plus
Dana\GF19011-PA 410 GF19011-PA 6..339 243..577 867 49.3 Plus
Dana\GF19012-PA 542 GF19012-PA 288..526 1..195 313 33.5 Plus
Dana\GF16969-PA 1234 GF16969-PA 369..736 153..561 179 22.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2014-11-27 13:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10638-PA 1259 GG10638-PA 471..1259 1..780 3765 95.4 Plus
Dere\GG16401-PA 975 GG16401-PA 292..930 1..588 1238 40.6 Plus
Dere\GG22803-PA 1221 GG22803-PA 364..731 153..561 182 22.8 Plus
Dere\GG11045-PA 1217 GG11045-PA 364..731 153..561 182 22.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2014-11-27 13:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20808-PA 1297 GH20808-PA 557..1219 1..657 3296 92.3 Plus
Dgri\GH23961-PA 1005 GH23961-PA 302..897 1..560 1205 41.4 Plus
Dgri\GH16266-PA 1218 GH16266-PA 365..732 153..561 179 22.4 Plus
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
mtt-PG 1472 CG30361-PG 636..1415 1..780 4133 100 Plus
mtt-PF 1248 CG30361-PF 469..1248 1..780 4133 100 Plus
mtt-PE 1095 CG30361-PE 316..1095 1..780 4133 100 Plus
mtt-PD 1415 CG30361-PD 636..1415 1..780 4133 100 Plus
mtt-PC 780 CG30361-PC 1..780 1..780 4133 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2014-11-27 13:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20896-PA 1309 GI20896-PA 545..1309 1..780 3382 82.9 Plus
Dmoj\GI14041-PA 999 GI14041-PA 293..872 1..574 1258 42.2 Plus
Dmoj\GI22184-PA 1225 GI22184-PA 364..731 153..561 183 22.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2014-11-27 13:32:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10858-PA 1278 GL10858-PA 497..1190 1..719 3434 88.6 Plus
Dper\GL17542-PA 950 GL17542-PA 299..853 1..560 1242 43.6 Plus
Dper\GL23745-PA 938 GL23745-PA 363..730 153..561 169 21.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2014-11-27 13:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24510-PA 1279 GA24510-PA 498..1191 1..719 3428 88.5 Plus
Dpse\GA22410-PA 839 GA22410-PA 348..742 161..560 1005 48.4 Plus
Dpse\GA19799-PA 1223 GA19799-PA 363..730 153..561 177 22.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2014-11-27 13:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20683-PA 1292 GM20683-PA 469..1243 1..774 3826 97.7 Plus
Dsec\GM13020-PA 570 GM13020-PA 1..481 102..560 1034 43.3 Plus
Dsec\GM26815-PA 410 GM26815-PA 291..369 1..79 211 43 Plus
Dsec\GM23697-PA 1222 GM23697-PA 364..731 153..561 181 22.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2014-11-27 13:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15273-PA 679 GD15273-PA 283..662 165..544 2059 99.2 Plus
Dsim\GD15273-PA 679 GD15273-PA 1..282 1..282 1576 98.6 Plus
Dsim\GD10163-PA 388 GD10163-PA 1..339 437..774 1336 94.1 Plus
Dsim\GD10165-PA 489 GD10165-PA 290..470 544..722 645 94.5 Plus
Dsim\GD18506-PA 1220 GD18506-PA 364..731 153..561 182 22.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2014-11-27 13:32:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20628-PA 1346 GJ20628-PA 537..1243 1..729 3363 86.2 Plus
Dvir\GJ13080-PA 989 GJ13080-PA 299..900 1..574 1220 41.3 Plus
Dvir\GJ24302-PA 1199 GJ24302-PA 364..731 153..561 186 22.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2014-11-27 13:32:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21809-PA 1024 GK21809-PA 267..1024 1..780 3350 83.8 Plus
Dwil\GK13663-PA 1160 GK13663-PA 461..1065 1..574 1236 41 Plus
Dwil\GK13022-PA 1215 GK13022-PA 366..733 153..561 175 22.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2014-11-27 13:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22975-PA 1306 GE22975-PA 484..1241 1..750 3688 96.4 Plus
Dyak\GE14562-PA 976 GE14562-PA 292..930 1..588 1264 40.5 Plus
Dyak\GE24090-PA 1227 GE24090-PA 365..732 153..561 182 22.8 Plus

RH53709.hyp Sequence

Translation from 93 to 2435

> RH53709.hyp
MRAVRRANATGSFSWIGSDGWSARNLVSDDYEPEVEGTLSVQPQANPVRG
FEEYFLSLTVENNQRNPWFVEFWEDHFQCRYPGSTSTPYNNYTKQCTTKE
RLSRQNTDFEDQLQFVSDAVMAFAYALRDMHRDLCGGGPSLCEAMKPTKG
ADLLKYLRKVEFEGLSGDEFRFDGNGDGPARYNIIHFKQSQAGQYHWVKV
GEYTEGELRLNMTEVKFKRLSPKPPESVCSLPCLVGQAKKYVEGESCCWH
CFNCTTYQIRHPDDETHCKLCKLGTLPDAHKQYCRPIPEIYLRPESAWAI
GAMAFSATGILVTLFVMGVFVRHNDTPIVRASGRELSYILLAGIFMCYGV
TFALVLKPTNIVCAIQRFGVGFCFTVVYAALLTKTNRIARIFKAGKQSAK
RPSFISPKSQLVICACLVSVQILINGVWMVIAPSHAMHHYPTREDNLLVC
DSYIDASYMIAFSYPIFLIVICTVYAVLTRKIPEAFNESKHIGFTMYTTC
VIWLAFVPLYFGTANHVPLRITSMSVTISLSASVTIACLFSPKLYIILIR
PERNVRQSMMPPRYGNMHRTAGTGPSSMMAAAVVTAATCAQEEKIQKHIT
PTNTENSLKTKKLCEMATQTISSIITSLDINAYNQIPYADQYVPNNATTA
TTTPTDKGSGNGNSNSNSNTNGSSNSNSNSNGDGDVATEQVVANNNKINQ
RQHGQPAVAFAITSTNNHISGPAATITTTAATGETTTEALVATITTPLAT
VDGSETMSVAPNNGHGNNGSQRPPVLQTNL*

RH53709.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
mtt-PG 1472 CG30361-PG 636..1415 1..780 4133 100 Plus
mtt-PF 1248 CG30361-PF 469..1248 1..780 4133 100 Plus
mtt-PE 1095 CG30361-PE 316..1095 1..780 4133 100 Plus
mtt-PD 1415 CG30361-PD 636..1415 1..780 4133 100 Plus
mtt-PC 780 CG30361-PC 1..780 1..780 4133 100 Plus